U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    SNR38 [ Saccharomyces cerevisiae S288C ]

    Gene ID: 9164913, updated on 9-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    SNR38
    Primary source
    SGD:S000007301
    Locus tag
    YNCK0009W
    See related
    AllianceGenome:SGD:S000007301
    Gene type
    ncRNA
    RNA name
    snoRNA
    Organism
    Saccharomyces cerevisiae S288C (strain: S288C)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
    Summary
    Predicted to enable rRNA 2'-O-ribose methylation guide activity. Predicted to be involved in rRNA methylation. Predicted to be located in nucleolus. Predicted to be part of box C/D methylation guide snoRNP complex. [provided by Alliance of Genome Resources, Dec 2024]
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See SNR38 in Genome Data Viewer
    Location:
    chromosome: XI
    Exon count:
    1
    Sequence:
    Chromosome: XI; NC_001143.9 (283185..283279)

    Chromosome XI - NC_001143.9Genomic Context describing neighboring genes Neighboring gene Hot13p Neighboring gene ribosome biosynthesis protein RRP14 Neighboring gene translation elongation factor EF1B gamma Neighboring gene H(+)-transporting V1 sector ATPase subunit C Neighboring gene Smy1p

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_001143.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Illumina-based RiboMethSeq approach for mapping of 2'-O-Me residues in RNA. Marchand V, et al. Nucleic Acids Res, 2016 Sep 19. PMID 27302133, Free PMC Article
    2. Association of snR190 snoRNA chaperone with early pre-60S particles is regulated by the RNA helicase Dbp7 in yeast. Jaafar M, et al. Nat Commun, 2021 Oct 22. PMID 34686656, Free PMC Article
    3. Site-specific ribose methylation of preribosomal RNA: a novel function for small nucleolar RNAs. Kiss-László Z, et al. Cell, 1996 Jun 28. PMID 8674114
    4. A computational screen for methylation guide snoRNAs in yeast. Lowe TM, et al. Science, 1999 Feb 19. PMID 10024243
    5. A comprehensive database for the small nucleolar RNAs from Saccharomyces cerevisiae. Samarsky DA, et al. Nucleic Acids Res, 1999 Jan 1. PMID 9847166, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Markers

    • C/D box small nucleolar RNA (snoRNA); guides 2'-O-methylation of large subunit (LSU) rRNA at position G2815

    Gene Ontology Provided by SGD

    Function Evidence Code Pubs
    enables rRNA 2'-O-ribose methylation guide activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in RNA processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in rRNA methylation ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of box C/D methylation guide snoRNP complex IC
    Inferred by Curator
    more info
    		 PubMed 
    located_in nucleolus IC
    Inferred by Curator
    more info
    		 PubMed 
    located_in nucleolus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_001143.9 Reference assembly

      Range
      283185..283279
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. NR_132200.1 RNA Sequence

      Status: REVIEWED

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials