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    RRT13 Rrt13p [ Saccharomyces cerevisiae S288C ]

    Gene ID: 856796, updated on 9-Dec-2024

    Summary

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    Official Symbol
    RRT13
    Official Full Name
    Rrt13p
    Primary source
    SGD:S000000868
    Locus tag
    YER066W
    See related
    AllianceGenome:SGD:S000000868; FungiDB:YER066W; VEuPathDB:YER066W
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Saccharomyces cerevisiae S288C (strain: S288C)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
    Summary
    Orthologous to human FBXW9 (F-box and WD repeat domain containing 9). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See RRT13 in Genome Data Viewer
    Location:
    chromosome: V
    Exon count:
    1
    Sequence:
    Chromosome: V; NC_001137.3 (290242..290799)

    Chromosome V - NC_001137.3Genomic Context describing neighboring genes Neighboring gene isocitrate lyase 1 Neighboring gene tRNA-Ser Neighboring gene Rgi1p Neighboring gene CCR4-NOT core ubiquitin-protein ligase subunit MOT2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_001137.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic identification of factors that modulate ribosomal DNA transcription in Saccharomyces cerevisiae. Hontz RD, et al. Genetics, 2009 May. PMID 19270272, Free PMC Article
    2. Saccharomyces cerevisiae S288C genome annotation: a working hypothesis. Fisk DG, et al. Yeast, 2006 Sep. PMID 17001629, Free PMC Article
    3. The nucleotide sequence of Saccharomyces cerevisiae chromosome V. Dietrich FS, et al. Nature, 1997 May 29. PMID 9169868, Free PMC Article
    4. Functional characterisation of long intergenic non-coding RNAs through genetic interaction profiling in Saccharomyces cerevisiae. Kyriakou D, et al. BMC Biol, 2016 Dec 7. PMID 27927215, Free PMC Article
    5. Association of yeast Upf1p with direct substrates of the NMD pathway. Johansson MJ, et al. Proc Natl Acad Sci U S A, 2007 Dec 26. PMID 18087042, Free PMC Article

    See all (14) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by SGD

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    Rrt13p
    NP_010988.1
    • hypothetical protein; non-essential gene identified in a screen for mutants with decreased levels of rDNA transcription

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_001137.3 Reference assembly

      Range
      290242..290799
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001178957.1 → NP_010988.1  TPA: Rrt13p [Saccharomyces cerevisiae S288C]

      See identical proteins and their annotated locations for NP_010988.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      D3DLX1, P40042
      UniProtKB/TrEMBL
      A6ZR20
      Conserved Domains (2) summary
      sd00039
      Location:15 → 71
      7WD40; WD40 repeat [structural motif]
      cl29593
      Location:2 → 175
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P40042.1

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