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    ccdc87 coiled-coil domain containing 87 [ Danio rerio (zebrafish) ]

    Gene ID: 556936, updated on 4-Jan-2025

    Summary

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    Official Symbol
    ccdc87provided by ZNC
    Official Full Name
    coiled-coil domain containing 87provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-041210-118
    See related
    Ensembl:ENSDARG00000045683 AllianceGenome:ZFIN:ZDB-GENE-041210-118
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    im:6912536; im:7151541; si:dkeyp-81f3.1; si:ch211-266a5.1
    Summary
    Orthologous to human CCDC87 (coiled-coil domain containing 87). [provided by Alliance of Genome Resources, Jan 2025]
    Orthologs
    human mouse all
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    Genomic context

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    See ccdc87 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 4 NC_007115.7 (13615721..13624294)
    105 previous assembly GRCz10 (GCF_000002035.5) 4 NC_007115.6 (13616884..13619104)

    Chromosome 4 - NC_007115.7Genomic Context describing neighboring genes Neighboring gene transportin 3 Neighboring gene si:dkeyp-81f3.4 Neighboring gene interferon regulatory factor 5 Neighboring gene patatin-like phospholipase domain containing 8 Neighboring gene neuronal cell adhesion molecule a

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. 15000 unique zebrafish EST clusters and their future use in microarray for profiling gene expression patterns during embryogenesis. Lo J, et al. Genome Res, 2003 Mar. PMID 12618376, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    coiled-coil domain-containing protein 87

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007115.7 Reference GRCz11 Primary Assembly

      Range
      13615721..13624294
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_068220754.1 → XP_068076855.1  coiled-coil domain-containing protein 87

      Related
      ENSDARP00000115444.1, ENSDART00000141395.3

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001044817.2: Suppressed sequence

      Description
      NM_001044817.2: This RefSeq was suppressed temporarily based on the calculation that the encoded protein was shorter than proteins from the putative ortholog from human: CCDC87 (GeneID:55231).
    Nucleotide Protein Strain
    Heading Accession and Version

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