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    tuft1b tuftelin 1b [ Danio rerio (zebrafish) ]

    Gene ID: 100005886, updated on 4-Jan-2025

    Summary

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    Official Symbol
    tuft1bprovided by ZNC
    Official Full Name
    tuftelin 1bprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-060503-150
    See related
    Ensembl:ENSDARG00000071010 AllianceGenome:ZFIN:ZDB-GENE-060503-150
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    si:dkey-204a24.6
    Summary
    Orthologous to human TUFT1 (tuftelin 1). [provided by Alliance of Genome Resources, Jan 2025]
    Orthologs
    all
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    Genomic context

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    See tuft1b in Genome Data Viewer
    Location:
    chromosome: 19
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 19 NC_007130.7 (7717447..7752648)
    105 previous assembly GRCz10 (GCF_000002035.5) 19 NC_007130.6 (7798529..7829928)

    Chromosome 19 - NC_007130.7Genomic Context describing neighboring genes Neighboring gene si:dkey-204a24.11 Neighboring gene upregulator of cell proliferation Neighboring gene ubiquitin associated protein 2-like Neighboring gene HCLS1 associated protein X-1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. 15000 unique zebrafish EST clusters and their future use in microarray for profiling gene expression patterns during embryogenesis. Lo J, et al. Genome Res, 2003 Mar. PMID 12618376, Free PMC Article
    2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    5. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    tuftelin 1b

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001082986.1 → NP_001076455.1  tuftelin 1b

      See identical proteins and their annotated locations for NP_001076455.1

      Status: PROVISIONAL

      Source sequence(s)
      CR628394
      UniProtKB/TrEMBL
      A0A8M2B6C7, Q1L8T4
      Related
      ENSDARP00000150818.1, ENSDART00000186717.1
      Conserved Domains (1) summary
      cl00459
      Location:79 → 193
      MIT_CorA-like; metal ion transporter CorA-like divalent cation transporter superfamily

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007130.7 Reference GRCz11 Primary Assembly

      Range
      7717447..7752648
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005159389.4 → XP_005159446.1  tuftelin 1b isoform X1

      See identical proteins and their annotated locations for XP_005159446.1

      UniProtKB/TrEMBL
      A0A8M2B6C7, Q1L8T4
      Conserved Domains (1) summary
      cl00459
      Location:79 → 193
      MIT_CorA-like; metal ion transporter CorA-like divalent cation transporter superfamily

    2. XM_005159388.5 → XP_005159445.1  tuftelin 1b isoform X1

      See identical proteins and their annotated locations for XP_005159445.1

      UniProtKB/TrEMBL
      A0A8M2B6C7, Q1L8T4
      Related
      ENSDARP00000122657.2, ENSDART00000146747.4
      Conserved Domains (1) summary
      cl00459
      Location:79 → 193
      MIT_CorA-like; metal ion transporter CorA-like divalent cation transporter superfamily

    3. XM_021467961.2 → XP_021323636.1  tuftelin 1b isoform X2

      UniProtKB/TrEMBL
      A0A8M9PN06
      Conserved Domains (1) summary
      cl25732
      Location:46 → 197
      SMC_N; RecF/RecN/SMC N terminal domain
    Nucleotide Protein
    Heading Accession and Version

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