si:ch211-225h24.2 si:ch211-225h24.2 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: si:ch211-225h24.2provided by ZNC
Official Full Name: si:ch211-225h24.2provided by ZNC
Primary source: ZFIN:ZDB-GENE-030131-1581
See related: Ensembl:ENSDARG00000104936 AllianceGenome:ZFIN:ZDB-GENE-030131-1581
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: fb75c07; wu:fb75c07
Summary: Predicted to be involved in spermatogenesis. Predicted to be active in cytosol and nucleus. Orthologous to human TDRP (testis development related protein). [provided by Alliance of Genome Resources, Jan 2025]
Orthologs: all
NEW: Try the new Gene table
Try the new Transcript table

Genomic context

See si:ch211-225h24.2 in Genome Data Viewer

Location:: chromosome: 23

Exon count:: 4

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	23	NC_007134.7 (35426479..35462594)
105	previous assembly	GRCz10 (GCF_000002035.5)	23	NC_007134.6 (35327209..35362607)

Chromosome 23 - NC_007134.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to reference sequence details

Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help

See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

Go to the top of the page Help

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

General gene information

Go to the top of the page Help

Gene Ontology Provided by ZFIN

Process	Evidence Code	Pubs
involved_in spermatogenesis	IBA Inferred from Biological aspect of Ancestor more info
acts_upstream_of_or_within spermatogenesis	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
is_active_in cytosol	IBA Inferred from Biological aspect of Ancestor more info
is_active_in nucleus	IBA Inferred from Biological aspect of Ancestor more info

General protein information

Go to the top of the page Help

Preferred Names: uncharacterized protein LOC564539

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001386502.1 → NP_001373431.1 uncharacterized protein LOC564539

Status: VALIDATED

Source sequence(s)

AL807818

UniProtKB/TrEMBL

A0A0R4IDJ7, A0A8N7UV11

Related

ENSDARP00000131118.1, ENSDART00000164658.2

Conserved Domains (1) summary

pfam15683
Location:54 → 228

TDRP; Testis development-related protein