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    4933402J07Rik RIKEN cDNA 4933402J07 gene [ Mus musculus (house mouse) ]

    Gene ID: 330820, updated on 9-Dec-2024

    Summary

    Official Symbol
    4933402J07Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 4933402J07 geneprovided by MGI
    Primary source
    MGI:MGI:3607717
    See related
    Ensembl:ENSMUSG00000069971 AllianceGenome:MGI:3607717
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Summary
    Orthologous to human C16orf78 (chromosome 16 open reading frame 78). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Restricted expression toward testis adult (RPKM 141.8) See more
    Orthologs
    NEW
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    Genomic context

    See 4933402J07Rik in Genome Data Viewer
    Location:
    8 C3; 8 42.21 cM
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 8 NC_000074.7 (88290535..88315825)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 8 NC_000074.6 (87563907..87589197)

    Chromosome 8 - NC_000074.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_22201 Neighboring gene cerebellin 1 precursor protein opposite strand Neighboring gene cerebellin 1 precursor protein Neighboring gene STARR-seq mESC enhancer starr_22203 Neighboring gene STARR-seq mESC enhancer starr_22205 Neighboring gene STARR-seq mESC enhancer starr_22207 Neighboring gene STARR-seq mESC enhancer starr_22208 Neighboring gene RIKEN cDNA 1700096P03 gene Neighboring gene VISTA enhancer mm1567 Neighboring gene zinc finger protein 423 Neighboring gene STARR-seq mESC enhancer starr_22210 Neighboring gene STARR-seq mESC enhancer starr_22215 Neighboring gene predicted gene, 34412

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    General protein information

    Preferred Names
    uncharacterized protein C16orf78 homolog

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_177901.3NP_808569.1  uncharacterized protein C16orf78 homolog

      See identical proteins and their annotated locations for NP_808569.1

      Status: PROVISIONAL

      Source sequence(s)
      AK077084
      Consensus CDS
      CCDS52626.1
      UniProtKB/TrEMBL
      Q3V0R6, Q8BHX0
      Related
      ENSMUSP00000091033.6, ENSMUST00000093342.6
      Conserved Domains (1) summary
      pfam15472
      Location:1269
      DUF4638; Domain of unknown function (DUF4638)

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000074.7 Reference GRCm39 C57BL/6J

      Range
      88290535..88315825
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)