U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Tceal9 transcription elongation factor A like 9 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 680354, updated on 9-Dec-2024

    Summary

    Official Symbol
    Tceal9provided by RGD
    Official Full Name
    transcription elongation factor A like 9provided by RGD
    Primary source
    RGD:1592975
    See related
    EnsemblRapid:ENSRNOG00000034198 AllianceGenome:RGD:1592975
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Wbp5; RGD1560111
    Summary
    Orthologous to human TCEAL9 (transcription elongation factor A like 9). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Adrenal (RPKM 1757.9), Lung (RPKM 699.4) and 9 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Tceal9 in Genome Data Viewer
    Location:
    Xq32
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) X NC_086039.1 (104037274..104039345)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) X NC_051356.1 (99245645..99247720)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) X NC_005120.4 (106791333..106794667)

    Chromosome X - NC_086039.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134484140 Neighboring gene programmed cell death 6, pseudogene 1 Neighboring gene small nuclear ribonucleoprotein polypeptide C, pseudogene 9 Neighboring gene brain expressed X-linked 3 Neighboring gene developmental pluripotency-associated 4, pseudogene 2

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General protein information

    Preferred Names
    transcription elongation factor A protein-like 9
    Names
    WW domain-binding protein 5

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001127502.2NP_001120974.1  transcription elongation factor A protein-like 9

      See identical proteins and their annotated locations for NP_001120974.1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000021
      UniProtKB/TrEMBL
      A0A8I5ZNB4, B2RYT6
      Related
      ENSRNOP00000050036.3, ENSRNOT00000050302.6
      Conserved Domains (1) summary
      pfam04538
      Location:44102
      BEX; Brain expressed X-linked like family

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086039.1 Reference GRCr8

      Range
      104037274..104039345
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006257281.4XP_006257343.1  transcription elongation factor A protein-like 9 isoform X1

      See identical proteins and their annotated locations for XP_006257343.1

      UniProtKB/TrEMBL
      A0A8I5ZNB4, B2RYT6
      Related
      ENSRNOP00000104384.1, ENSRNOT00000137566.1
      Conserved Domains (1) summary
      pfam04538
      Location:44102
      BEX; Brain expressed X-linked like family
    2. XM_008773438.3XP_008771660.1  transcription elongation factor A protein-like 9 isoform X1

      See identical proteins and their annotated locations for XP_008771660.1

      UniProtKB/TrEMBL
      A0A8I5ZNB4, B2RYT6
      Related
      ENSRNOP00000079799.1, ENSRNOT00000110789.2
      Conserved Domains (1) summary
      pfam04538
      Location:44102
      BEX; Brain expressed X-linked like family