U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    S100g S100 calcium binding protein G [ Mus musculus (house mouse) ]

    Gene ID: 12309, updated on 9-Dec-2024

    Summary

    Official Symbol
    S100gprovided by MGI
    Official Full Name
    S100 calcium binding protein Gprovided by MGI
    Primary source
    MGI:MGI:104528
    See related
    Ensembl:ENSMUSG00000040808 AllianceGenome:MGI:104528
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    CABP1; Calb3; Cabp9k; CaBP-D9K
    Summary
    Predicted to enable calcium ion binding activity and calcium-dependent protein binding activity. Located in apical plasma membrane and basolateral plasma membrane. Is expressed in several structures, including extraembryonic component; gut; metanephros; placenta; and ureter. Orthologous to human S100G (S100 calcium binding protein G). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in placenta adult (RPKM 553.0), kidney adult (RPKM 166.8) and 2 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See S100g in Genome Data Viewer
    Location:
    X F4; X 75.15 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) X NC_000086.8 (161744988..161747595, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (162961992..162964599, complement)

    Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene predicted gene 15209 Neighboring gene Mki67 (FHA domain) interacting nucleolar phosphoprotein pseudogene Neighboring gene cytidine 5'-triphosphate synthase 2 Neighboring gene STARR-seq mESC enhancer starr_48220 Neighboring gene STARR-seq mESC enhancer starr_48221 Neighboring gene STARR-seq mESC enhancer starr_48222 Neighboring gene STARR-seq mESC enhancer starr_48223 Neighboring gene STARR-seq mESC enhancer starr_48224 Neighboring gene STARR-seq mESC enhancer starr_48225 Neighboring gene predicted gene, 22746 Neighboring gene STARR-seq mESC enhancer starr_48226 Neighboring gene STARR-seq mESC enhancer starr_48227 Neighboring gene STARR-seq mESC enhancer starr_48228 Neighboring gene predicted gene 15212

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables calcium ion binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables calcium-dependent protein binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables transition metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables vitamin D binding IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    located_in apical plasma membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in basolateral plasma membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
     

    General protein information

    Preferred Names
    protein S100-G
    Names
    CABP
    calbindin 3, (vitamin D-dependent calcium binding protein)
    calbindin D9k
    calbindin-D9K major form
    cytidine 5'-triphosphate synthase 2
    vitamin D-dependent calcium-binding protein, intestinal

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_009789.2NP_033919.1  protein S100-G

      Status: VALIDATED

      Source sequence(s)
      AF293948
      Consensus CDS
      CCDS41203.1
      UniProtKB/Swiss-Prot
      P97816
      UniProtKB/TrEMBL
      Q5VM59, Q91XG5
      Related
      ENSMUSP00000045120.3, ENSMUST00000038769.3
      Conserved Domains (2) summary
      cd00213
      Location:470
      S-100; S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 ...
      pfam13499
      Location:1074
      EF-hand_7; EF-hand domain pair

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000086.8 Reference GRCm39 C57BL/6J

      Range
      161744988..161747595 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)