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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001111268.3 → NP_001104738.2 glutamate receptor ionotropic, kainate 2 isoform 1 precursor
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) encodes the longer isoform (1). Variants 1 and 3 encode the same isoform (1).
- Source sequence(s)
-
AC110043, AC113305, AC115891, AC152981, AC153801, AC153953
- Consensus CDS
-
CCDS48554.1
- UniProtKB/Swiss-Prot
- P39087, Q60933
- UniProtKB/TrEMBL
-
A3KMF0
- Related
- ENSMUSP00000151921.2, ENSMUST00000218823.2
- Conserved Domains (2) summary
-
- cd06382
Location:37 → 414
- PBP1_iGluR_Kainate; N-terminal leucine-isoleucine-valine binding protein (LIVBP)-like domain of the kainate receptors
- cl21456
Location:430 → 800
- Periplasmic_Binding_Protein_Type_2; Type 2 periplasmic binding fold superfamily
-
NM_001358866.2 → NP_001345795.2 glutamate receptor ionotropic, kainate 2 isoform 1 precursor
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) differs in the 5' UTR compared to variant 1. Variants 1 and 3 encode the same isoform (1).
- Source sequence(s)
-
AC110043, AC113305, AC115891, AC152981, AC153801, AC153953
- Consensus CDS
-
CCDS48554.1
- UniProtKB/Swiss-Prot
- P39087, Q60933
- UniProtKB/TrEMBL
-
A3KMF0
- Conserved Domains (2) summary
-
- cd06382
Location:37 → 414
- PBP1_iGluR_Kainate; N-terminal leucine-isoleucine-valine binding protein (LIVBP)-like domain of the kainate receptors
- cl21456
Location:430 → 800
- Periplasmic_Binding_Protein_Type_2; Type 2 periplasmic binding fold superfamily
-
NM_001428505.1 → NP_001415434.1 glutamate receptor ionotropic, kainate 2 isoform 3 precursor
Status: REVIEWED
- Source sequence(s)
-
AC110043, AC113305, AC115891, AC152981, AC153801, AC153953
- UniProtKB/TrEMBL
- A0A1W2P6S5, A3KMF0
-
NM_001428506.1 → NP_001415435.1 glutamate receptor ionotropic, kainate 2 isoform 4 precursor
Status: REVIEWED
- Source sequence(s)
-
AC110043, AC115891, AC152981, AC153801, AC153953
- UniProtKB/TrEMBL
-
A3KMF0
-
NM_001428507.1 → NP_001415436.1 glutamate receptor ionotropic, kainate 2 isoform 5 precursor
Status: REVIEWED
- Source sequence(s)
-
AC110043, AC115891, AC152981
- UniProtKB/TrEMBL
-
Q6PAQ0
-
NM_010349.4 → NP_034479.3 glutamate receptor ionotropic, kainate 2 isoform 2 precursor
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) contains an additional exon at the 3' end compared to transcript variant 1, causing a frame-shift and early translation termination. The resulting isoform (2) is shorter and has a distinct C-terminus compared to isoform 1.
- Source sequence(s)
-
AC110043, AC113305, AC115891, AC152981, AC153801, AC153953
- Consensus CDS
-
CCDS23830.1
- UniProtKB/TrEMBL
-
A3KMF0
- Related
- ENSMUSP00000151671.2, ENSMUST00000218441.2
- Conserved Domains (2) summary
-
- cd06382
Location:37 → 414
- PBP1_iGluR_Kainate; N-terminal leucine-isoleucine-valine binding protein (LIVBP)-like domain of the kainate receptors
- cl21456
Location:430 → 800
- Periplasmic_Binding_Protein_Type_2; Type 2 periplasmic binding fold superfamily
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCm39 C57BL/6J
Genomic
-
NC_000076.7 Reference GRCm39 C57BL/6J
- Range
-
48969776..49666523 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_011243120.4 → XP_011241422.1 glutamate receptor ionotropic, kainate 2 isoform X1
See identical proteins and their annotated locations for XP_011241422.1
- UniProtKB/TrEMBL
-
A3KMF0
- Conserved Domains (2) summary
-
- cd06382
Location:37 → 414
- PBP1_iGluR_Kainate; N-terminal leucine-isoleucine-valine binding protein (LIVBP)-like domain of the kainate receptors
- cl21456
Location:430 → 835
- Periplasmic_Binding_Protein_Type_2; Type 2 periplasmic binding fold superfamily
-
XM_011243123.4 → XP_011241425.1 glutamate receptor ionotropic, kainate 2 isoform X2
- UniProtKB/TrEMBL
-
A3KMF0
- Conserved Domains (2) summary
-
- cd06382
Location:37 → 414
- PBP1_iGluR_Kainate; N-terminal leucine-isoleucine-valine binding protein (LIVBP)-like domain of the kainate receptors
- cl21456
Location:430 → 835
- Periplasmic_Binding_Protein_Type_2; Type 2 periplasmic binding fold superfamily
-
XM_011243124.4 → XP_011241426.1 glutamate receptor ionotropic, kainate 2 isoform X4
See identical proteins and their annotated locations for XP_011241426.1
- UniProtKB/TrEMBL
-
A3KMF0
- Conserved Domains (2) summary
-
- cd06382
Location:37 → 414
- PBP1_iGluR_Kainate; N-terminal leucine-isoleucine-valine binding protein (LIVBP)-like domain of the kainate receptors
- cl21456
Location:430 → 835
- Periplasmic_Binding_Protein_Type_2; Type 2 periplasmic binding fold superfamily
-
XM_011243122.4 → XP_011241424.1 glutamate receptor ionotropic, kainate 2 isoform X1
See identical proteins and their annotated locations for XP_011241424.1
- UniProtKB/TrEMBL
-
A3KMF0
- Conserved Domains (2) summary
-
- cd06382
Location:37 → 414
- PBP1_iGluR_Kainate; N-terminal leucine-isoleucine-valine binding protein (LIVBP)-like domain of the kainate receptors
- cl21456
Location:430 → 835
- Periplasmic_Binding_Protein_Type_2; Type 2 periplasmic binding fold superfamily
-
XM_011243121.3 → XP_011241423.1 glutamate receptor ionotropic, kainate 2 isoform X1
See identical proteins and their annotated locations for XP_011241423.1
- UniProtKB/TrEMBL
-
A3KMF0
- Conserved Domains (2) summary
-
- cd06382
Location:37 → 414
- PBP1_iGluR_Kainate; N-terminal leucine-isoleucine-valine binding protein (LIVBP)-like domain of the kainate receptors
- cl21456
Location:430 → 835
- Periplasmic_Binding_Protein_Type_2; Type 2 periplasmic binding fold superfamily
-
XM_036155621.1 → XP_036011514.1 glutamate receptor ionotropic, kainate 2 isoform X3
- UniProtKB/Swiss-Prot
- P39087, Q60933
- UniProtKB/TrEMBL
-
A3KMF0
- Related
- ENSMUSP00000101124.4, ENSMUST00000105484.10
- Conserved Domains (2) summary
-
- cd06382
Location:37 → 414
- PBP1_iGluR_Kainate; N-terminal leucine-isoleucine-valine binding protein (LIVBP)-like domain of the kainate receptors
- cl21456
Location:430 → 800
- Periplasmic_Binding_Protein_Type_2; Type 2 periplasmic binding fold superfamily
-
XM_030244887.2 → XP_030100747.1 glutamate receptor ionotropic, kainate 2 isoform X1
- UniProtKB/TrEMBL
-
A3KMF0
- Conserved Domains (2) summary
-
- cd06382
Location:37 → 414
- PBP1_iGluR_Kainate; N-terminal leucine-isoleucine-valine binding protein (LIVBP)-like domain of the kainate receptors
- cl21456
Location:430 → 835
- Periplasmic_Binding_Protein_Type_2; Type 2 periplasmic binding fold superfamily
-
XM_006512545.5 → XP_006512608.1 glutamate receptor ionotropic, kainate 2 isoform X5
- Related
- ENSMUSP00000151389.2, ENSMUST00000218598.2
- Conserved Domains (2) summary
-
- cd06382
Location:37 → 414
- PBP1_iGluR_Kainate; N-terminal leucine-isoleucine-valine binding protein (LIVBP)-like domain of the kainate receptors
- cl21456
Location:430 → 800
- Periplasmic_Binding_Protein_Type_2; Type 2 periplasmic binding fold superfamily
-
XM_011243125.4 → XP_011241427.1 glutamate receptor ionotropic, kainate 2 isoform X4
See identical proteins and their annotated locations for XP_011241427.1
- UniProtKB/TrEMBL
-
A3KMF0
- Conserved Domains (2) summary
-
- cd06382
Location:37 → 414
- PBP1_iGluR_Kainate; N-terminal leucine-isoleucine-valine binding protein (LIVBP)-like domain of the kainate receptors
- cl21456
Location:430 → 835
- Periplasmic_Binding_Protein_Type_2; Type 2 periplasmic binding fold superfamily
-
XM_011243127.4 → XP_011241429.1 glutamate receptor ionotropic, kainate 2 isoform X6
- Conserved Domains (2) summary
-
- cd06382
Location:37 → 414
- PBP1_iGluR_Kainate; N-terminal leucine-isoleucine-valine binding protein (LIVBP)-like domain of the kainate receptors
- cl21456
Location:430 → 596
- Periplasmic_Binding_Protein_Type_2; Type 2 periplasmic binding fold superfamily
RNA
-
XR_003948597.2 RNA Sequence
-
XR_001779464.3 RNA Sequence
-
XR_004936102.1 RNA Sequence
-
XR_001779465.3 RNA Sequence
The following Reference Sequences have been suppressed. Explain
These RefSeqs were suppressed for the
cited reason(s). Suppressed RefSeqs do not appear in BLAST databases, related
sequence links, or BLAST links (BLink), but may still be retrieved by clicking on
their accession.version below.
-
NG_018799.1: Suppressed sequence
- Description
- NG_018799.1: This RefSeq was permanently suppressed because it is now thought that this pseudogene is transcribed.
-
NR_046212.1: Suppressed sequence
- Description
- NR_046212.1: This RefSeq was removed because it is composed of UTR sequence.