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    Lcnl Lipocalin like [ Rattus norvegicus (Norway rat) ]

    Gene ID: 681186, updated on 27-Nov-2024

    Summary

    Official Symbol
    Lcnlprovided by RGD
    Official Full Name
    Lipocalin likeprovided by RGD
    Primary source
    RGD:1583505
    See related
    AllianceGenome:RGD:1583505
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to enable small molecule binding activity. Predicted to be located in extracellular region. [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in Adrenal (RPKM 4.5), Thymus (RPKM 3.8) and 8 other tissues See more
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    Genomic context

    See Lcnl in Genome Data Viewer
    Location:
    3p13
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 3 NC_086021.1 (29870542..29875304)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 3 NC_051338.1 (9472456..9477218)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 3 NC_005102.4 (4095698..4104349)

    Chromosome 3 - NC_086021.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100911266 Neighboring gene small nucleolar RNA SNORA43 Neighboring gene small nucleolar RNA SNORA17 Neighboring gene lipocalin 4 like 3 Neighboring gene uncharacterized LOC102547612

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General protein information

    Preferred Names
    uncharacterized protein LOC681186
    Names
    rCG45447-like
    vomeronasal secretory protein 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001408963.1NP_001395892.1  uncharacterized protein LOC681186 precursor

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000003
      UniProtKB/TrEMBL
      A0A8I5ZT42

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086021.1 Reference GRCr8

      Range
      29870542..29875304
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063284546.1XP_063140616.1  uncharacterized protein LOC681186 isoform X1

    2. XM_063284547.1XP_063140617.1  uncharacterized protein LOC681186 isoform X2

    3. XM_063284548.1XP_063140618.1  uncharacterized protein LOC681186 isoform X3