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    Pcp4l1 Purkinje cell protein 4-like 1 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 685448, updated on 27-Nov-2024

    Summary

    Official Symbol
    Pcp4l1provided by RGD
    Official Full Name
    Purkinje cell protein 4-like 1provided by RGD
    Primary source
    RGD:1593809
    See related
    EnsemblRapid:ENSRNOG00000003209 AllianceGenome:RGD:1593809
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Orthologous to human PCP4L1 (Purkinje cell protein 4 like 1). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in Heart (RPKM 73.3), Brain (RPKM 64.1) and 7 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See Pcp4l1 in Genome Data Viewer
    Location:
    13q24
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 13 NC_086031.1 (86121463..86145097, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 13 NC_051348.1 (83588992..83612631, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 13 NC_005112.4 (89542377..89565920, complement)

    Chromosome 13 - NC_086031.1Genomic Context describing neighboring genes Neighboring gene succinate dehydrogenase complex subunit C Neighboring gene myelin protein zero Neighboring gene nuclear receptor subfamily 1, group I, member 3 Neighboring gene translocase of outer mitochondrial membrane 40 like Neighboring gene apolipoprotein A2

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General protein information

    Preferred Names
    Purkinje cell protein 4-like protein 1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001126093.2NP_001119565.1  Purkinje cell protein 4-like protein 1

      See identical proteins and their annotated locations for NP_001119565.1

      Status: PROVISIONAL

      Source sequence(s)
      BC086330
      UniProtKB/TrEMBL
      A0A8J8XIE2, B1WC83, D4A945
      Related
      ENSRNOP00000004347.5, ENSRNOT00000004347.7

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086031.1 Reference GRCr8

      Range
      86121463..86145097 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017598936.3XP_017454425.1  Purkinje cell protein 4-like protein 1 isoform X1

      UniProtKB/TrEMBL
      A6JFU7
    2. XM_063272605.1XP_063128675.1  Purkinje cell protein 4-like protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A8I6AUS6
      Related
      ENSRNOP00000097708.1, ENSRNOT00000101106.2