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    Zc3h11a zinc finger CCCH-type containing 11A [ Rattus norvegicus (Norway rat) ]

    Gene ID: 360845, updated on 14-Nov-2024

    Summary

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    Official Symbol
    Zc3h11aprovided by RGD
    Official Full Name
    zinc finger CCCH-type containing 11Aprovided by RGD
    Primary source
    RGD:1308290
    See related
    EnsemblRapid:ENSRNOG00000085640 AllianceGenome:RGD:1308290
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1308290
    Summary
    Predicted to be involved in poly(A)+ mRNA export from nucleus. Predicted to be part of transcription export complex. Orthologous to several human genes including ZC3H11A (zinc finger CCCH-type containing 11A). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in Lung (RPKM 309.8), Spleen (RPKM 280.9) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Zc3h11a in Genome Data Viewer
    Location:
    13q13
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 13 NC_086031.1 (47625444..47665971, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 13 NC_051348.1 (45073422..45113901, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 13 NC_005112.4 (50196042..50234862)

    Chromosome 13 - NC_086031.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103692077 Neighboring gene uncharacterized LOC134481497 Neighboring gene small nuclear ribonucleoprotein polypeptide E Neighboring gene uncharacterized LOC108352533 Neighboring gene NADH:ubiquinone oxidoreductase subunit B10, pseudogene 1 Neighboring gene zinc finger, BED-type containing 6 Neighboring gene uncharacterized LOC120096250 Neighboring gene lymphocyte transmembrane adaptor 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. The proteins PDIP3 and ZC11A associate with the human TREX complex in an ATP-dependent manner and function in mRNA export. Folco EG, et al. PLoS One, 2012. PMID 22928037, Free PMC Article
    2. The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts. Baltz AG, et al. Mol Cell, 2012 Jun 8. PMID 22681889
    3. Insights into RNA biology from an atlas of mammalian mRNA-binding proteins. Castello A, et al. Cell, 2012 Jun 8. PMID 22658674
    4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Process Evidence Code Pubs
    involved_in poly(A)+ mRNA export from nucleus ISO
    Inferred from Sequence Orthology
    more info
    		  
    Component Evidence Code Pubs
    part_of transcription export complex ISO
    Inferred from Sequence Orthology
    more info
    		  

    General protein information

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    Preferred Names
    zinc finger CCCH domain-containing protein 11A

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001047902.1 → NP_001041367.1  zinc finger CCCH domain-containing protein 11A

      See identical proteins and their annotated locations for NP_001041367.1

      Status: PROVISIONAL

      Source sequence(s)
      DQ480752
      UniProtKB/TrEMBL
      A6IC84, Q0ZFS5
      Conserved Domains (2) summary
      PRK05035
      Location:432 → 686
      PRK05035; electron transport complex protein RnfC; Provisional
      pfam15663
      Location:1 → 110
      zf-CCCH_3; Zinc-finger containing family

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086031.1 Reference GRCr8

      Range
      47625444..47665971 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063272466.1 → XP_063128536.1  zinc finger CCCH domain-containing protein 11A isoform X2

      UniProtKB/TrEMBL
      Q0ZFS5

    2. XM_039090893.2 → XP_038946821.1  zinc finger CCCH domain-containing protein 11A isoform X2

      UniProtKB/TrEMBL
      A6IC84, Q0ZFS5
      Conserved Domains (2) summary
      PRK05035
      Location:432 → 686
      PRK05035; electron transport complex protein RnfC; Provisional
      pfam15663
      Location:1 → 110
      zf-CCCH_3; Zinc-finger containing family

    3. XM_063272465.1 → XP_063128535.1  zinc finger CCCH domain-containing protein 11A isoform X2

      UniProtKB/TrEMBL
      Q0ZFS5

    4. XM_039090895.2 → XP_038946823.1  zinc finger CCCH domain-containing protein 11A isoform X3

      UniProtKB/TrEMBL
      A6IC84
      Conserved Domains (2) summary
      PRK05035
      Location:431 → 685
      PRK05035; electron transport complex protein RnfC; Provisional
      pfam15663
      Location:1 → 110
      zf-CCCH_3; Zinc-finger containing family

    5. XM_063272467.1 → XP_063128537.1  zinc finger CCCH domain-containing protein 11A isoform X4

    6. XM_039090891.2 → XP_038946819.1  zinc finger CCCH domain-containing protein 11A isoform X1

      UniProtKB/TrEMBL
      A6IC84
      Related
      ENSRNOP00000104143.1, ENSRNOT00000150512.1
      Conserved Domains (2) summary
      PRK05035
      Location:446 → 700
      PRK05035; electron transport complex protein RnfC; Provisional
      pfam15663
      Location:1 → 124
      zf-CCCH_3; Zinc-finger containing family

    7. XM_039090896.2 → XP_038946824.1  zinc finger CCCH domain-containing protein 11A isoform X5

      UniProtKB/TrEMBL
      Q0D2G9
      Conserved Domains (1) summary
      PRK05035
      Location:115 → 369
      PRK05035; electron transport complex protein RnfC; Provisional
    Nucleotide Protein Strain
    Heading Accession and Version

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