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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001166388.2 → NP_001159860.1 protein tyrosine phosphatase type IVA 3 isoform 1
See identical proteins and their annotated locations for NP_001159860.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) encodes the longer isoform (1).
- Source sequence(s)
-
AC119884
- Consensus CDS
-
CCDS27519.1
- UniProtKB/Swiss-Prot
- O70275, Q3T9Z5, Q9CTC8, Q9D658
- UniProtKB/TrEMBL
-
Q4FK37
- Related
- ENSMUSP00000131281.2, ENSMUST00000163582.9
- Conserved Domains (1) summary
-
- cl28904
Location:5 → 158
- PTP_DSP_cys; cys-based protein tyrosine phosphatase and dual-specificity phosphatase superfamily
-
NM_001166389.2 → NP_001159861.1 protein tyrosine phosphatase type IVA 3 isoform 1
See identical proteins and their annotated locations for NP_001159861.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (3) has an alternate 5' UTR exon, as compared to variant 1 has an alternate 5' UTR exon, as compared to variant 1, and encodes isoform 1.
- Source sequence(s)
-
AC119884
- Consensus CDS
-
CCDS27519.1
- UniProtKB/Swiss-Prot
- O70275, Q3T9Z5, Q9CTC8, Q9D658
- UniProtKB/TrEMBL
-
Q4FK37
- Related
- ENSMUSP00000132097.2, ENSMUST00000165541.8
- Conserved Domains (1) summary
-
- cl28904
Location:5 → 158
- PTP_DSP_cys; cys-based protein tyrosine phosphatase and dual-specificity phosphatase superfamily
-
NM_001166390.2 → NP_001159862.1 protein tyrosine phosphatase type IVA 3 isoform 2
Status: VALIDATED
- Description
- Transcript Variant: This variant (4) differs in the 5' sequence, as compared to variant 1. The resulting isoform (2) is shorter and has a distinct N-terminus, as compared to isoform 1.
- Source sequence(s)
-
AC119884
- UniProtKB/TrEMBL
- E9PXS4, Q4FK37
- Related
- ENSMUSP00000131036.2, ENSMUST00000167582.8
- Conserved Domains (1) summary
-
- cl21483
Location:18 → 154
- PTPc; Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr ...
-
NM_001357591.2 → NP_001344520.1 protein tyrosine phosphatase type IVA 3 isoform 1
Status: VALIDATED
- Description
- Transcript Variant: This variant (12) has an alternate 5' UTR exon, as compared to variant 1, and encodes isoform 1.
- Source sequence(s)
-
AC119884
- Consensus CDS
-
CCDS27519.1
- UniProtKB/Swiss-Prot
- O70275, Q3T9Z5, Q9CTC8, Q9D658
- UniProtKB/TrEMBL
-
Q4FK37
- Related
- ENSMUSP00000154829.2, ENSMUST00000230177.2
- Conserved Domains (1) summary
-
- cl28904
Location:5 → 158
- PTP_DSP_cys; cys-based protein tyrosine phosphatase and dual-specificity phosphatase superfamily
-
NM_001411696.1 → NP_001398625.1 protein tyrosine phosphatase type IVA 3 isoform 1
Status: VALIDATED
- Description
- Transcript Variant: This variant (10) has an alternate 5' UTR exon, as compared to variant 1, and encodes isoform 1.
- Source sequence(s)
-
AC119884
- UniProtKB/Swiss-Prot
- O70275, Q3T9Z5, Q9CTC8, Q9D658
- UniProtKB/TrEMBL
-
Q4FK37
-
NM_001411697.1 → NP_001398626.1 protein tyrosine phosphatase type IVA 3 isoform 1
Status: VALIDATED
- Description
- Transcript Variant: This variant (9) has an alternate 5' UTR exon, as compared to variant 1, and encodes isoform 1.
- Source sequence(s)
-
AC119884
- UniProtKB/Swiss-Prot
- O70275, Q3T9Z5, Q9CTC8, Q9D658
- UniProtKB/TrEMBL
-
Q4FK37
-
NM_001411698.1 → NP_001398627.1 protein tyrosine phosphatase type IVA 3 isoform 1
Status: VALIDATED
- Description
- Transcript Variant: This variant (8) has an alternate 5' UTR exon, as compared to variant 1, and encodes isoform 1.
- Source sequence(s)
-
AC119884
- UniProtKB/Swiss-Prot
- O70275, Q3T9Z5, Q9CTC8, Q9D658
- UniProtKB/TrEMBL
-
Q4FK37
-
NM_001411699.1 → NP_001398628.1 protein tyrosine phosphatase type IVA 3 isoform 1
Status: VALIDATED
- Description
- Transcript Variant: This variant (7) has an alternate 5' UTR exon, as compared to variant 1, and encodes isoform 1.
- Source sequence(s)
-
AC119884
- UniProtKB/Swiss-Prot
- O70275, Q3T9Z5, Q9CTC8, Q9D658
- UniProtKB/TrEMBL
-
Q4FK37
-
NM_001411700.1 → NP_001398629.1 protein tyrosine phosphatase type IVA 3 isoform 1
Status: VALIDATED
- Description
- Transcript Variant: This variant (6) has an alternate 5' UTR exon, as compared to variant 1, and encodes isoform 1.
- Source sequence(s)
-
AC119884
- UniProtKB/Swiss-Prot
- O70275, Q3T9Z5, Q9CTC8, Q9D658
- UniProtKB/TrEMBL
-
Q4FK37
-
NM_008975.4 → NP_033001.2 protein tyrosine phosphatase type IVA 3 isoform 1
See identical proteins and their annotated locations for NP_033001.2
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) has an alternate 5' UTR exon, as compared to variant 1, and encodes isoform 1.
- Source sequence(s)
-
AC119884
- Consensus CDS
-
CCDS27519.1
- UniProtKB/Swiss-Prot
- O70275, Q3T9Z5, Q9CTC8, Q9D658
- UniProtKB/TrEMBL
-
Q4FK37
- Related
- ENSMUSP00000060956.7, ENSMUST00000053232.8
- Conserved Domains (1) summary
-
- cl28904
Location:5 → 158
- PTP_DSP_cys; cys-based protein tyrosine phosphatase and dual-specificity phosphatase superfamily
RNA
-
NR_177452.1 RNA Sequence
Status: VALIDATED
- Description
- Transcript Variant: This variant (11) has an alternate 5' UTR exon and skips an internal exon, as compared to variant 1. This variant is represented as non-coding because it lacks a large portion of the coding region, including the translational start codon, found in variant 1.
- Source sequence(s)
-
AC119884
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCm39 C57BL/6J
Genomic
-
NC_000081.7 Reference GRCm39 C57BL/6J
- Range
-
73594991..73629075
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)