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    DNAJC17 DnaJ heat shock protein family (Hsp40) member C17 [ Gallus gallus (chicken) ]

    Gene ID: 770519, updated on 3-Dec-2024

    Summary

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    Official Symbol
    DNAJC17provided by CGNC
    Official Full Name
    DnaJ heat shock protein family (Hsp40) member C17provided by CGNC
    Primary source
    CGNC:16913
    See related
    Ensembl:ENSGALG00010023205
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See DNAJC17 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 5 NC_052536.1 (1186331..1208640, complement)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 5 NC_052577.1 (1181021..1203338, complement)

    Chromosome 5 - NC_052536.1Genomic Context describing neighboring genes Neighboring gene cytochrome P450 family 1 subfamily C polypeptide 1 Neighboring gene regulator of microtubule dynamics 3 Neighboring gene microRNA 1808 Neighboring gene GTP cyclohydrolase I feedback regulator Neighboring gene C15orf62 homolog Neighboring gene olfactory receptor 1052-like Neighboring gene olfactory receptor, family 8, subfamily U, member 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Analysis of chicken embryonic gonad expressed sequenced tags. Shin JH, et al. Anim Genet, 2006 Feb. PMID 16441308
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in spliceosomal complex disassembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of spliceosomal complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    dnaJ homolog subfamily C member 17
    Names
    DnaJ (Hsp40) homolog, subfamily C, member 17

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001267575.1 → NP_001254504.1  dnaJ homolog subfamily C member 17

      Status: VALIDATED

      Source sequence(s)
      BX930005, CV859257
      UniProtKB/TrEMBL
      A0A8V0ZLR9
      Related
      ENSGALP00010034317.1, ENSGALT00010056575.1
      Conserved Domains (3) summary
      PRK00409
      Location:75 → 158
      PRK00409; recombination and DNA strand exchange inhibitor protein; Reviewed
      pfam00226
      Location:18 → 73
      DnaJ; DnaJ domain
      cd12429
      Location:172 → 248
      RRM_DNAJC17; RNA recognition motif (RRM) found in the DnaJ homolog subfamily C member 17

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052536.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      1186331..1208640 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040701136.2 → XP_040557070.1  dnaJ homolog subfamily C member 17 isoform X1

      UniProtKB/TrEMBL
      A0A8V0ZLR9
      Conserved Domains (2) summary
      pfam00226
      Location:18 → 73
      DnaJ; DnaJ domain
      cd12429
      Location:175 → 251
      RRM_DNAJC17; RNA recognition motif (RRM) found in the DnaJ homolog subfamily C member 17

    2. XM_040701137.2 → XP_040557071.1  dnaJ homolog subfamily C member 17 isoform X2

      UniProtKB/TrEMBL
      A0A8V0ZLR9
      Conserved Domains (3) summary
      PRK00409
      Location:75 → 158
      PRK00409; recombination and DNA strand exchange inhibitor protein; Reviewed
      pfam00226
      Location:18 → 73
      DnaJ; DnaJ domain
      cd12429
      Location:172 → 248
      RRM_DNAJC17; RNA recognition motif (RRM) found in the DnaJ homolog subfamily C member 17

    3. XM_025150843.3 → XP_025006611.1  dnaJ homolog subfamily C member 17 isoform X3

      UniProtKB/TrEMBL
      A0A8V0ZLR9
      Conserved Domains (3) summary
      pfam00226
      Location:18 → 73
      DnaJ; DnaJ domain
      pfam04111
      Location:66 → 157
      APG6; Autophagy protein Apg6
      cl17169
      Location:172 → 221
      RRM_SF; RNA recognition motif (RRM) superfamily

    4. XM_015286225.4 → XP_015141711.1  dnaJ homolog subfamily C member 17 isoform X1

      UniProtKB/TrEMBL
      A0A8V0ZLR9
      Related
      ENSGALP00010034330.1, ENSGALT00010056588.1
      Conserved Domains (2) summary
      pfam00226
      Location:18 → 73
      DnaJ; DnaJ domain
      cd12429
      Location:175 → 251
      RRM_DNAJC17; RNA recognition motif (RRM) found in the DnaJ homolog subfamily C member 17

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052577.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      1181021..1203338 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046918904.1 → XP_046774860.1  dnaJ homolog subfamily C member 17 isoform X1

      UniProtKB/TrEMBL
      A0A8V0ZLR9

    2. XM_046918905.1 → XP_046774861.1  dnaJ homolog subfamily C member 17 isoform X2

      UniProtKB/TrEMBL
      A0A8V0ZLR9

    3. XM_046918906.1 → XP_046774862.1  dnaJ homolog subfamily C member 17 isoform X3

      UniProtKB/TrEMBL
      A0A8V0ZLR9

    4. XM_046918903.1 → XP_046774859.1  dnaJ homolog subfamily C member 17 isoform X1

      UniProtKB/TrEMBL
      A0A8V0ZLR9
    Nucleotide Protein Strain
    Heading Accession and Version

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