HBP1 HMG-box transcription factor 1 [Gallus gallus (chicken)] - Gene

Summary

Symbol: HBP1provided by CGNC
Full Name: HMG-box transcription factor 1provided by CGNC
Primary source: CGNC:6093
See related: Ensembl:ENSGALG00010009081
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Gallus gallus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 1

Exon count:: 12

Annotation release	Status	Assembly	Chr	Location
106	current	bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2)	1	NC_052532.1 (14741159..14756466)
106	current	bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2)	1	NC_052573.1 (14878660..14893967)

Chromosome 1 - NC_052532.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

HBP1 promotes the senescence and apoptosis of chicken preadipocytes.
Title: Transcription factor HBP1: A regulator of senescence and apoptosis of preadipocytes.

Submit: New GeneRIF Correction

General gene information

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Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific	IEA Inferred from Electronic Annotation more info	PubMed
enables RNA binding	IEA Inferred from Electronic Annotation more info	PubMed
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding	IEA Inferred from Electronic Annotation more info	PubMed
enables protein binding	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in regulation of transcription by RNA polymerase II	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
located_in nucleus	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: HMG box-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001199454.3 → NP_001186383.1 HMG box-containing protein 1

Status: PROVISIONAL

Source sequence(s)

BI394669, BU254246, BU455142, BU472995, JAENSK010000012

Conserved Domains (2) summary

cd01388
Location:436 → 507

SOX-TCF_HMG-box; SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and ...

cl22470
Location:213 → 339

AXH; Ataxin-1 and HBP1 module (AXH)

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

NC_052532.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Range

14741159..14756466

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_015275712.4 → XP_015131198.2 HMG box-containing protein 1 isoform X1

UniProtKB/TrEMBL

A0A8V0Y8L1

Related

ENSGALP00010012338.1, ENSGALT00010021641.1

Conserved Domains (2) summary

cd01388
Location:449 → 520

SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...

cl22470
Location:226 → 352

AXH; Ataxin-1 and HBP1 module (AXH)
XM_015275713.4 → XP_015131199.2 HMG box-containing protein 1 isoform X2

UniProtKB/TrEMBL

A0A8V0Y8M1

Related

ENSGALP00010012348.1, ENSGALT00010021654.1

Conserved Domains (2) summary

cd01388
Location:444 → 515

SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...

cl22470
Location:226 → 347

AXH; Ataxin-1 and HBP1 module (AXH)
XM_046930715.1 → XP_046786671.1 HMG box-containing protein 1 isoform X3
XM_046930844.1 → XP_046786800.1 HMG box-containing protein 1 isoform X4
XM_046930778.1 → XP_046786734.1 HMG box-containing protein 1 isoform X3

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

NC_052573.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Range

14878660..14893967

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_046907048.1 → XP_046763004.1 HMG box-containing protein 1 isoform X1

UniProtKB/TrEMBL

A0A8V0Y8L1
XM_046907049.1 → XP_046763005.1 HMG box-containing protein 1 isoform X2

UniProtKB/TrEMBL

A0A8V0Y8M1
XM_046907050.1 → XP_046763006.1 HMG box-containing protein 1 isoform X3
XM_046907052.1 → XP_046763008.1 HMG box-containing protein 1 isoform X4
XM_046907051.1 → XP_046763007.1 HMG box-containing protein 1 isoform X3