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    GYG1 glycogenin 1 [ Gallus gallus (chicken) ]

    Gene ID: 425050, updated on 3-Dec-2024

    Summary

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    Symbol
    GYG1provided by CGNC
    Full Name
    glycogenin 1provided by CGNC
    Primary source
    CGNC:7949
    See related
    Ensembl:ENSGALG00010001135
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Also known as
    GYG; glycogenin-1
    Orthologs
    human mouse all
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    Genomic context

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    See GYG1 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 9 NC_052540.1 (23653007..23668124, complement)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 9 NC_052581.1 (23438454..23453556, complement)

    Chromosome 9 - NC_052540.1Genomic Context describing neighboring genes Neighboring gene HPS3, biogenesis of lysosomal organelles complex 2 subunit 1 Neighboring gene ceruloplasmin Neighboring gene uncharacterized LOC107054152 Neighboring gene tubulin alpha-3 chain-like Neighboring gene uncharacterized LOC121111520 Neighboring gene uncharacterized LOC124417096

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables glycosyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    glycogenin-1
    NP_001006558.2
    XP_025009163.1
    XP_040561538.1
    XP_046754425.1
    XP_046754426.1
    XP_046754427.1
    XP_046754428.1
    XP_046754429.1
    XP_046779939.1
    XP_046779940.1
    XP_046779941.1
    XP_046779942.1
    XP_046779943.1
    XP_046779944.1
    XP_046779945.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001006558.2 → NP_001006558.2  glycogenin-1

      Status: VALIDATED

      Source sequence(s)
      JAENSK010000240
      UniProtKB/TrEMBL
      A0A1D5PAA8, Q5ZJQ0
      Related
      ENSGALP00010001125.1, ENSGALT00010002575.1
      Conserved Domains (1) summary
      cd02537
      Location:4 → 254
      GT8_Glycogenin; Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052540.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      23653007..23668124 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046898470.1 → XP_046754426.1  glycogenin-1 isoform X2

      UniProtKB/TrEMBL
      Q5ZJQ0

    2. XM_046898473.1 → XP_046754429.1  glycogenin-1 isoform X2

      UniProtKB/TrEMBL
      Q5ZJQ0

    3. XM_046898471.1 → XP_046754427.1  glycogenin-1 isoform X2

      UniProtKB/TrEMBL
      Q5ZJQ0

    4. XM_046898472.1 → XP_046754428.1  glycogenin-1 isoform X2

      UniProtKB/TrEMBL
      Q5ZJQ0

    5. XM_046898469.1 → XP_046754425.1  glycogenin-1 isoform X2

      UniProtKB/TrEMBL
      Q5ZJQ0

    6. XM_040705604.2 → XP_040561538.1  glycogenin-1 isoform X3

      UniProtKB/TrEMBL
      Q5ZJQ0
      Conserved Domains (1) summary
      cd02537
      Location:4 → 254
      GT8_Glycogenin; Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen

    7. XM_025153395.3 → XP_025009163.1  glycogenin-1 isoform X1

      UniProtKB/TrEMBL
      A0A8V0X6S6
      Conserved Domains (1) summary
      cd02537
      Location:4 → 254
      GT8_Glycogenin; Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052581.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      23438454..23453556 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046923985.1 → XP_046779941.1  glycogenin-1 isoform X2

      UniProtKB/TrEMBL
      Q5ZJQ0

    2. XM_046923988.1 → XP_046779944.1  glycogenin-1 isoform X2

      UniProtKB/TrEMBL
      Q5ZJQ0

    3. XM_046923986.1 → XP_046779942.1  glycogenin-1 isoform X2

      UniProtKB/TrEMBL
      Q5ZJQ0

    4. XM_046923987.1 → XP_046779943.1  glycogenin-1 isoform X2

      UniProtKB/TrEMBL
      Q5ZJQ0

    5. XM_046923984.1 → XP_046779940.1  glycogenin-1 isoform X2

      UniProtKB/TrEMBL
      Q5ZJQ0

    6. XM_046923989.1 → XP_046779945.1  glycogenin-1 isoform X3

      UniProtKB/TrEMBL
      Q5ZJQ0

    7. XM_046923983.1 → XP_046779939.1  glycogenin-1 isoform X1

      UniProtKB/TrEMBL
      A0A8V0X6S6
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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