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    DEAF1 DEAF1 transcription factor [ Gallus gallus (chicken) ]

    Gene ID: 423017, updated on 3-Dec-2024

    Summary

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    Official Symbol
    DEAF1provided by CGNC
    Official Full Name
    DEAF1 transcription factorprovided by CGNC
    Primary source
    CGNC:3787
    See related
    Ensembl:ENSGALG00010022239
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See DEAF1 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 5 NC_052536.1 (724910..744162)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 5 NC_052577.1 (719502..738752)

    Chromosome 5 - NC_052536.1Genomic Context describing neighboring genes Neighboring gene EPS8 like 2 Neighboring gene uncharacterized LOC107053358 Neighboring gene transmembrane protein 80 Neighboring gene microRNA 6579-2 Neighboring gene uncharacterized LOC121110886 Neighboring gene dopamine receptor D4 Neighboring gene secretin

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    deformed epidermal autoregulatory factor 1 homolog
    Names
    DEAF-1 related transcriptional regulator
    suppressin

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001137649.1 → NP_001131121.1  deformed epidermal autoregulatory factor 1 homolog

      See identical proteins and their annotated locations for NP_001131121.1

      Status: PROVISIONAL

      Source sequence(s)
      FJ217173
      UniProtKB/TrEMBL
      A0A8V0ZUY0, B6UV99
      Related
      ENSGALP00010032656.1, ENSGALT00010054125.1
      Conserved Domains (2) summary
      pfam01342
      Location:178 → 252
      SAND; SAND domain
      pfam01753
      Location:485 → 521
      zf-MYND; MYND finger

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052536.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      724910..744162
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015286218.4 → XP_015141704.1  deformed epidermal autoregulatory factor 1 homolog isoform X3

      UniProtKB/TrEMBL
      A0A8V0ZUY0
      Conserved Domains (2) summary
      pfam01342
      Location:178 → 252
      SAND; SAND domain
      pfam01753
      Location:507 → 534
      zf-MYND; MYND finger

    2. XM_015286216.4 → XP_015141702.1  deformed epidermal autoregulatory factor 1 homolog isoform X1

      UniProtKB/TrEMBL
      A0A8V0ZUY0
      Related
      ENSGALP00010032645.1, ENSGALT00010054114.1
      Conserved Domains (2) summary
      pfam01342
      Location:178 → 252
      SAND; SAND domain
      pfam01753
      Location:507 → 543
      zf-MYND; MYND finger

    3. XM_040700794.2 → XP_040556728.1  deformed epidermal autoregulatory factor 1 homolog isoform X4

      UniProtKB/TrEMBL
      A0A8V0ZUY0
      Conserved Domains (1) summary
      smart00258
      Location:182 → 253
      SAND; SAND domain

    4. XM_015286217.4 → XP_015141703.1  deformed epidermal autoregulatory factor 1 homolog isoform X2

      UniProtKB/TrEMBL
      A0A8V0ZUY0
      Conserved Domains (2) summary
      pfam01342
      Location:178 → 252
      SAND; SAND domain
      pfam01753
      Location:506 → 542
      zf-MYND; MYND finger

    5. XM_025150659.3 → XP_025006427.1  deformed epidermal autoregulatory factor 1 homolog isoform X5

      UniProtKB/TrEMBL
      A0A8V0ZUY0
      Conserved Domains (1) summary
      pfam01342
      Location:178 → 252
      SAND; SAND domain

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052577.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      719502..738752
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046918096.1 → XP_046774052.1  deformed epidermal autoregulatory factor 1 homolog isoform X3

      UniProtKB/TrEMBL
      A0A8V0ZUY0

    2. XM_046918094.1 → XP_046774050.1  deformed epidermal autoregulatory factor 1 homolog isoform X1

      UniProtKB/TrEMBL
      A0A8V0ZUY0

    3. XM_046918097.1 → XP_046774053.1  deformed epidermal autoregulatory factor 1 homolog isoform X4

      UniProtKB/TrEMBL
      A0A8V0ZUY0

    4. XM_046918095.1 → XP_046774051.1  deformed epidermal autoregulatory factor 1 homolog isoform X2

      UniProtKB/TrEMBL
      A0A8V0ZUY0

    5. XM_046918098.1 → XP_046774054.1  deformed epidermal autoregulatory factor 1 homolog isoform X5

      UniProtKB/TrEMBL
      A0A8V0ZUY0
    Nucleotide Protein
    Heading Accession and Version

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