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    SYNPO2L synaptopodin 2 like [ Gallus gallus (chicken) ]

    Gene ID: 423743, updated on 17-Aug-2024

    Summary

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    Symbol
    SYNPO2Lprovided by CGNC
    Full Name
    synaptopodin 2 likeprovided by CGNC
    Primary source
    CGNC:3876
    See related
    Ensembl:ENSGALG00010021220
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See SYNPO2L in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 6 NC_052537.1 (16749887..16784867)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 6 NC_052578.1 (16735694..16770649)

    Chromosome 6 - NC_052537.1Genomic Context describing neighboring genes Neighboring gene coiled-coil-helix-coiled-coil-helix domain containing 1 Neighboring gene fucosyltransferase 11 Neighboring gene SEC24 homolog C, COPII coat complex component Neighboring gene uncharacterized LOC112532650 Neighboring gene myozenin 1 Neighboring gene ubiquitin specific peptidase 54

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Cytoskeletal heart-enriched actin-associated protein (CHAP) is expressed in striated and smooth muscle cells in chick and mouse during embryonic and adult stages. van Eldik W, et al. Int J Dev Biol, 2011. PMID 21948713
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables actin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of actin filament bundle assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Z disc IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in actin cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    synaptopodin 2-like protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052537.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      16749887..16784867
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_421618.8 → XP_421618.4  synaptopodin 2-like protein isoform X1

      UniProtKB/TrEMBL
      A0A8V0ZH41
      Related
      ENSGALP00010030608.1, ENSGALT00010051417.1
      Conserved Domains (2) summary
      PHA03247
      Location:453 → 822
      PHA03247; large tegument protein UL36; Provisional
      cd00992
      Location:6 → 85
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...

    2. XM_004942082.4 → XP_004942139.3  synaptopodin 2-like protein isoform X2

      Conserved Domains (2) summary
      PHA03247
      Location:253 → 622
      PHA03247; large tegument protein UL36; Provisional
      PRK12323
      Location:673 → 870
      PRK12323; DNA polymerase III subunit gamma/tau

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052578.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      16735694..16770649
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040674534.2 → XP_040530468.1  synaptopodin 2-like protein isoform X1

      Conserved Domains (2) summary
      PHA03247
      Location:515 → 1019
      PHA03247; large tegument protein UL36; Provisional
      cd00992
      Location:6 → 85
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...

    2. XM_040674535.1 → XP_040530469.1  synaptopodin 2-like protein isoform X2

      Conserved Domains (1) summary
      PHA03247
      Location:315 → 819
      PHA03247; large tegument protein UL36; Provisional
    Nucleotide Protein Strain
    Heading Accession and Version

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