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    SNX4 sorting nexin 4 [ Gallus gallus (chicken) ]

    Gene ID: 424260, updated on 17-Aug-2024

    Summary

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    Symbol
    SNX4provided by CGNC
    Full Name
    sorting nexin 4provided by CGNC
    Primary source
    CGNC:9136
    See related
    Ensembl:ENSGALG00010020437
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See SNX4 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 7 NC_052538.1 (27704402..27734933, complement)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 7 NC_052579.1 (27618570..27654883, complement)

    Chromosome 7 - NC_052538.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121111236 Neighboring gene solute carrier family 12 member 8 Neighboring gene zinc finger protein 148 Neighboring gene uncharacterized LOC107053873 Neighboring gene uncharacterized LOC124418401 Neighboring gene transforming growth factor beta receptor 2 like Neighboring gene oxysterol binding protein like 11 Neighboring gene glycerol-3-phosphate dehydrogenase 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables phosphatidylinositol binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    sorting nexin-4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052538.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      27704402..27734933 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_004942954.5 → XP_004943011.3  sorting nexin-4 isoform X1

      UniProtKB/TrEMBL
      A0A8V0ZEP8
      Related
      ENSGALP00010029202.1, ENSGALT00010049406.1
      Conserved Domains (3) summary
      cd06864
      Location:127 → 254
      PX_SNX4; The phosphoinositide binding Phox Homology domain of Sorting Nexin 4
      cd07622
      Location:275 → 517
      BAR_SNX4; The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 4
      PRK13108
      Location:5 → 117
      PRK13108; prolipoprotein diacylglyceryl transferase; Reviewed

    2. XM_040703642.2 → XP_040559576.1  sorting nexin-4 isoform X2

      Conserved Domains (2) summary
      cd06864
      Location:9 → 136
      PX_SNX4; The phosphoinositide binding Phox Homology domain of Sorting Nexin 4
      cd07622
      Location:157 → 399
      BAR_SNX4; The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 4

    3. XM_046943767.1 → XP_046799723.1  sorting nexin-4 isoform X2

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052579.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      27618570..27654883 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046921768.1 → XP_046777724.1  sorting nexin-4 isoform X3

    2. XM_040675668.2 → XP_040531602.1  sorting nexin-4 isoform X1

      UniProtKB/TrEMBL
      A0A8V0ZEP8
      Conserved Domains (3) summary
      cd06864
      Location:127 → 254
      PX_SNX4; The phosphoinositide binding Phox Homology domain of Sorting Nexin 4
      cd07622
      Location:275 → 517
      BAR_SNX4; The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 4
      PRK13108
      Location:5 → 117
      PRK13108; prolipoprotein diacylglyceryl transferase; Reviewed

    3. XM_040675669.2 → XP_040531603.1  sorting nexin-4 isoform X2

      Conserved Domains (2) summary
      cd06864
      Location:9 → 136
      PX_SNX4; The phosphoinositide binding Phox Homology domain of Sorting Nexin 4
      cd07622
      Location:157 → 399
      BAR_SNX4; The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 4

    4. XM_046921769.1 → XP_046777725.1  sorting nexin-4 isoform X2

    Nucleotide Protein Strain
    Heading Accession and Version

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