The following sections contain reference sequences that belong to a specific genome build. Explain

This section includes genomic Reference Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate assemblies. Model RNAs and proteins are also reported here.

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

1. NC_052548.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

   Range

   5335215..5462706

   Download

   GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

1. XM_025141346.3 → XP_024997114.2  collagen alpha-1(XXVII) chain isoform X2

   UniProtKB/TrEMBL

   A0A8V1ABV6

   Conserved Domains (6) summary

   PHA03169
   Location:1071 → 1254

   PHA03169; hypothetical protein; Provisional

   pfam05109
   Location:284 → 493

   Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)

   pfam09606
   Location:626 → 965

   Med15; ARC105 or Med15 subunit of Mediator complex non-fungal

   pfam03157
   Location:1050 → 1517

   Glutenin_hmw; High molecular weight glutenin subunit

   cl02436
   Location:1547 → 1725

   COLFI; Fibrillar collagen C-terminal domain

   cl22861
   Location:45 → 227

   LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...

2. XM_025141347.3 → XP_024997115.2  collagen alpha-1(XXVII) chain isoform X2

   UniProtKB/TrEMBL

   A0A8V1ABV6

   Conserved Domains (6) summary

   PHA03169
   Location:1071 → 1254

   PHA03169; hypothetical protein; Provisional

   pfam05109
   Location:284 → 493

   Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)

   pfam09606
   Location:626 → 965

   Med15; ARC105 or Med15 subunit of Mediator complex non-fungal

   pfam03157
   Location:1050 → 1517

   Glutenin_hmw; High molecular weight glutenin subunit

   cl02436
   Location:1547 → 1725

   COLFI; Fibrillar collagen C-terminal domain

   cl22861
   Location:45 → 227

   LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...

3. XM_040649277.2 → XP_040505211.1  collagen alpha-1(XXVII) chain isoform X4

   UniProtKB/TrEMBL

   A0A8V1ABV6

   Related

   ENSGALP00010041717.1, ENSGALT00010067974.1

   Conserved Domains (5) summary

   PHA03169
   Location:1071 → 1254

   PHA03169; hypothetical protein; Provisional

   pfam05109
   Location:284 → 493

   Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)

   pfam03157
   Location:1050 → 1517

   Glutenin_hmw; High molecular weight glutenin subunit

   cl02436
   Location:1547 → 1747

   COLFI; Fibrillar collagen C-terminal domain

   cl22861
   Location:45 → 227

   LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...

4. XM_040649276.2 → XP_040505210.1  collagen alpha-1(XXVII) chain isoform X1

   UniProtKB/TrEMBL

   A0A8V1ABV6

   Conserved Domains (4) summary

   pfam05109
   Location:284 → 493

   Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)

   pfam03157
   Location:1049 → 1422

   Glutenin_hmw; High molecular weight glutenin subunit

   cl02436
   Location:1525 → 1703

   COLFI; Fibrillar collagen C-terminal domain

   cl22861
   Location:45 → 227

   LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...

5. XM_040649275.2 → XP_040505209.1  collagen alpha-1(XXVII) chain isoform X3

   UniProtKB/TrEMBL

   A0A8V1ABV6

   Conserved Domains (5) summary

   PHA03169
   Location:1069 → 1252

   PHA03169; hypothetical protein; Provisional

   pfam05109
   Location:282 → 491

   Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)

   pfam03157
   Location:1048 → 1515

   Glutenin_hmw; High molecular weight glutenin subunit

   cl02436
   Location:1545 → 1723

   COLFI; Fibrillar collagen C-terminal domain

   cl22861
   Location:43 → 225

   LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

1. NC_052589.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

   Range

   4748824..4876553

   Download

   GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

1. XM_040685820.2 → XP_040541754.1  collagen alpha-1(XXVII) chain isoform X2

   UniProtKB/TrEMBL

   A0A8V1ABV6

   Conserved Domains (6) summary

   PHA03169
   Location:1071 → 1254

   PHA03169; hypothetical protein; Provisional

   pfam05109
   Location:284 → 493

   Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)

   pfam09606
   Location:626 → 965

   Med15; ARC105 or Med15 subunit of Mediator complex non-fungal

   pfam03157
   Location:1050 → 1517

   Glutenin_hmw; High molecular weight glutenin subunit

   cl02436
   Location:1547 → 1725

   COLFI; Fibrillar collagen C-terminal domain

   cl22861
   Location:45 → 227

   LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...

2. XM_040685821.2 → XP_040541755.1  collagen alpha-1(XXVII) chain isoform X2

   UniProtKB/TrEMBL

   A0A8V1ABV6

   Conserved Domains (6) summary

   PHA03169
   Location:1071 → 1254

   PHA03169; hypothetical protein; Provisional

   pfam05109
   Location:284 → 493

   Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)

   pfam09606
   Location:626 → 965

   Med15; ARC105 or Med15 subunit of Mediator complex non-fungal

   pfam03157
   Location:1050 → 1517

   Glutenin_hmw; High molecular weight glutenin subunit

   cl02436
   Location:1547 → 1725

   COLFI; Fibrillar collagen C-terminal domain

   cl22861
   Location:45 → 227

   LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...

3. XM_040685825.2 → XP_040541759.1  collagen alpha-1(XXVII) chain isoform X4

   UniProtKB/TrEMBL

   A0A8V1ABV6

   Conserved Domains (5) summary

   PHA03169
   Location:1071 → 1254

   PHA03169; hypothetical protein; Provisional

   pfam05109
   Location:284 → 493

   Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)

   pfam03157
   Location:1050 → 1517

   Glutenin_hmw; High molecular weight glutenin subunit

   cl02436
   Location:1547 → 1747

   COLFI; Fibrillar collagen C-terminal domain

   cl22861
   Location:45 → 227

   LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...

4. XM_040685823.2 → XP_040541757.1  collagen alpha-1(XXVII) chain isoform X1

   UniProtKB/TrEMBL

   A0A8V1ABV6

   Conserved Domains (4) summary

   pfam05109
   Location:284 → 493

   Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)

   pfam03157
   Location:1049 → 1422

   Glutenin_hmw; High molecular weight glutenin subunit

   cl02436
   Location:1525 → 1703

   COLFI; Fibrillar collagen C-terminal domain

   cl22861
   Location:45 → 227

   LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...

5. XM_040685822.2 → XP_040541756.1  collagen alpha-1(XXVII) chain isoform X3

   UniProtKB/TrEMBL

   A0A8V1ABV6

   Conserved Domains (5) summary

   PHA03169
   Location:1069 → 1252

   PHA03169; hypothetical protein; Provisional

   pfam05109
   Location:282 → 491

   Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)

   pfam03157
   Location:1048 → 1515

   Glutenin_hmw; High molecular weight glutenin subunit

   cl02436
   Location:1545 → 1723

   COLFI; Fibrillar collagen C-terminal domain

   cl22861
   Location:43 → 225

   LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...