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    GPC4 glypican 4 [ Gallus gallus (chicken) ]

    Gene ID: 422234, updated on 3-Dec-2024

    Summary

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    Symbol
    GPC4provided by CGNC
    Full Name
    glypican 4provided by CGNC
    Primary source
    CGNC:4560
    See related
    Ensembl:ENSGALG00010017400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See GPC4 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 4 NC_052535.1 (3726954..3789700, complement)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 4 NC_052576.1 (3762357..3825029, complement)

    Chromosome 4 - NC_052535.1Genomic Context describing neighboring genes Neighboring gene heparan sulfate 6-O-sulfotransferase 2 Neighboring gene uncharacterized LOC101750312 Neighboring gene glypican 3 Neighboring gene uncharacterized LOC124417945 Neighboring gene microRNA mir-363

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in cell migration IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of protein localization to membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cell surface IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in collagen-containing extracellular matrix IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in synapse IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    glypican-4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052535.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      3726954..3789700 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015278449.4 → XP_015133935.1  glypican-4 isoform X1

      UniProtKB/TrEMBL
      A0A8V0Z7Y7
      Related
      ENSGALP00010024580.1, ENSGALT00010041994.1
      Conserved Domains (1) summary
      pfam01153
      Location:27 → 556
      Glypican

    2. XM_046940986.1 → XP_046796942.1  glypican-4 isoform X2

      UniProtKB/TrEMBL
      A0A8V0Z0K0

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052576.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      3762357..3825029 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040670988.2 → XP_040526922.1  glypican-4 isoform X1

      UniProtKB/TrEMBL
      A0A8V0Z7Y7
      Conserved Domains (1) summary
      pfam01153
      Location:27 → 556
      Glypican

    2. XM_046917137.1 → XP_046773093.1  glypican-4 isoform X2

      UniProtKB/TrEMBL
      A0A8V0Z0K0
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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    Research Materials