U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    PLOD2 procollagen-lysine,2-oxoglutarate 5-dioxygenase 2 [ Gallus gallus (chicken) ]

    Gene ID: 424882, updated on 17-Aug-2024

    Summary

    Go to the top of the page Help
    Symbol
    PLOD2provided by CGNC
    Full Name
    procollagen-lysine,2-oxoglutarate 5-dioxygenase 2provided by CGNC
    Primary source
    CGNC:5118
    See related
    Ensembl:ENSGALG00010016915
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Also known as
    PLOD3
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See PLOD2 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 9 NC_052540.1 (11168028..11218270, complement)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 9 NC_052581.1 (10978185..11028418, complement)

    Chromosome 9 - NC_052540.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112532996 Neighboring gene uncharacterized LOC101749016 Neighboring gene divergent protein kinase domain 2A Neighboring gene uncharacterized LOC107054108 Neighboring gene phospholipid scramblase 1 Neighboring gene phospholipid scramblase family member 5

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables L-ascorbic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables iron ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables procollagen-lysine 5-dioxygenase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in peptidyl-lysine hydroxylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    procollagen-lysine,2-oxoglutarate 5-dioxygenase 2
    Names
    procollagen-lysine, 2-oxoglutarate 5-dioxygenase (lysine hydroxylase) 2
    procollagen-lysine,2-oxoglutarate 5-dioxygenase 3
    XP_004943367.3
    XP_040535321.1
    XP_040535322.1
    XP_422695.6

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052540.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      11168028..11218270 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_422695.7 → XP_422695.6  procollagen-lysine,2-oxoglutarate 5-dioxygenase 2 isoform X2

      UniProtKB/TrEMBL
      A0A8V0YYS9
      Conserved Domains (2) summary
      cd00761
      Location:453 → 556
      Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
      smart00702
      Location:716 → 879
      P4Hc; Prolyl 4-hydroxylase alpha subunit homologues

    2. XM_004943310.4 → XP_004943367.3  procollagen-lysine,2-oxoglutarate 5-dioxygenase 2 isoform X1

      UniProtKB/TrEMBL
      A0A8V0YYS9
      Related
      ENSGALP00010023803.1, ENSGALT00010040839.1
      Conserved Domains (2) summary
      cd00761
      Location:453 → 556
      Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
      smart00702
      Location:737 → 900
      P4Hc; Prolyl 4-hydroxylase alpha subunit homologues

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052581.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      10978185..11028418 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040679388.1 → XP_040535322.1  procollagen-lysine,2-oxoglutarate 5-dioxygenase 2 isoform X2

      UniProtKB/TrEMBL
      A0A8V0YYS9
      Conserved Domains (2) summary
      cd00761
      Location:453 → 556
      Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
      smart00702
      Location:716 → 879
      P4Hc; Prolyl 4-hydroxylase alpha subunit homologues

    2. XM_040679387.1 → XP_040535321.1  procollagen-lysine,2-oxoglutarate 5-dioxygenase 2 isoform X1

      UniProtKB/TrEMBL
      A0A8V0YYS9
      Conserved Domains (2) summary
      cd00761
      Location:453 → 556
      Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
      smart00702
      Location:737 → 900
      P4Hc; Prolyl 4-hydroxylase alpha subunit homologues
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.