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    BSG basigin [ Gallus gallus (chicken) ]

    Gene ID: 770363, updated on 17-Aug-2024

    Summary

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    Official Symbol
    BSGprovided by CGNC
    Official Full Name
    basiginprovided by CGNC
    Primary source
    CGNC:909
    See related
    Ensembl:ENSGALG00010027468
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Also known as
    Bsg1
    Orthologs
    human mouse all
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    Genomic context

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    See BSG in Genome Data Viewer
    Location:
    chromosome: 28
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 28 NC_052559.1 (3108186..3119193)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 28 NC_052600.1 (2674274..2685262)

    Chromosome 28 - NC_052559.1Genomic Context describing neighboring genes Neighboring gene tubulin polyglutamylase complex subunit 1 Neighboring gene cell division cycle 34, ubiqiutin conjugating enzyme Neighboring gene hyperpolarization activated cyclic nucleotide gated potassium and sodium channel 2 Neighboring gene RNA polymerase mitochondrial

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Neurothelin: amino acid sequence, cell surface dynamics and actin colocalization. Schlosshauer B, et al. Eur J Cell Biol, 1995 Oct. PMID 8575462
    2. The inducible blood--brain barrier specific molecule HT7 is a novel immunoglobulin-like cell surface glycoprotein. Seulberger H, et al. EMBO J, 1990 Jul. PMID 2357963, Free PMC Article
    3. Retina-specific expression of 5A11/Basigin-2, a member of the immunoglobulin gene superfamily. Ochrietor JD, et al. Invest Ophthalmol Vis Sci, 2003 Sep. PMID 12939332
    4. Rod-derived cone viability factor promotes cone survival by stimulating aerobic glycolysis. Aït-Ali N, et al. Cell, 2015 May 7. PMID 25957687
    5. Gene expression profiling of chicken primordial germ cell ESTs. Han JY, et al. BMC Genomics, 2006 Aug 30. PMID 16939661, Free PMC Article

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cell-cell adhesion mediator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in axon guidance IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in dendrite self-avoidance IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in axon IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    basigin
    Names
    5A11 antigen
    basigin (Ok blood group)
    blood-brain barrier HT7 antigen
    neurothelin

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001198990.3 → NP_001185919.1  basigin isoform 1 precursor

      See identical proteins and their annotated locations for NP_001185919.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript and encodes the longer protein (isoform 1).
      Source sequence(s)
      JAENSK010000375
      UniProtKB/Swiss-Prot
      P17790, Q6X975
      Related
      ENSGALP00010040770.1, ENSGALT00010066568.1
      Conserved Domains (3) summary
      smart00409
      Location:236 → 323
      IG; Immunoglobulin
      pfam13927
      Location:144 → 212
      Ig_3; Immunoglobulin domain
      cd20940
      Location:28 → 143
      Ig0_BSG1; Immunoglobulin-like Ig0 domain of basigin-1 (BSG1) and similar proteins

    2. NM_001198992.2 → NP_001185921.1  basigin isoform 2 precursor

      See identical proteins and their annotated locations for NP_001185921.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) lacks an alternate in-frame exon compared to variant 1. The resulting protein (isoform 2) is shorter compared to isoform 1.
      Source sequence(s)
      JAENSK010000375
      UniProtKB/Swiss-Prot
      P17790
      Conserved Domains (3) summary
      cd00096
      Location:131 → 204
      Ig; Immunoglobulin domain
      smart00410
      Location:120 → 207
      IG_like; Immunoglobulin like
      pfam13927
      Location:29 → 96
      Ig_3; Immunoglobulin domain

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052559.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      3108186..3119193
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052600.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      2674274..2685262
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P17790.2 GenPept UniProtKB/Swiss-Prot:P17790

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.