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    NPAT nuclear protein, coactivator of histone transcription [ Gallus gallus (chicken) ]

    Gene ID: 418967, updated on 17-Aug-2024

    Summary

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    Symbol
    NPATprovided by CGNC
    Full Name
    nuclear protein, coactivator of histone transcriptionprovided by CGNC
    Primary source
    CGNC:12889
    See related
    Ensembl:ENSGALG00010004868
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See NPAT in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 1 NC_052532.1 (180192093..180213218)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 1 NC_052573.1 (180224741..180245882)

    Chromosome 1 - NC_052532.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121109181 Neighboring gene ATM serine/threonine kinase Neighboring gene acetyl-CoA acetyltransferase 1 Neighboring gene cullin 5

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transcription coregulator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein NPAT
    Names
    nuclear protein, ataxia-telangiectasia locus
    nuclear protein, co-activator of histone transcription

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052532.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      180192093..180213218
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015279515.4 → XP_015135001.3  protein NPAT isoform X1

      UniProtKB/TrEMBL
      A0A8V0XE31
      Related
      ENSGALP00010006392.1, ENSGALT00010011354.1
      Conserved Domains (1) summary
      TIGR03835
      Location:658 → 877
      termin_org_DnaJ; terminal organelle assembly protein TopJ

    2. XM_015279520.4 → XP_015135006.3  protein NPAT isoform X3

      Conserved Domains (1) summary
      TIGR03835
      Location:656 → 875
      termin_org_DnaJ; terminal organelle assembly protein TopJ

    3. XM_015279517.4 → XP_015135003.3  protein NPAT isoform X2

      Conserved Domains (1) summary
      TIGR03835
      Location:657 → 876
      termin_org_DnaJ; terminal organelle assembly protein TopJ

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052573.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      180224741..180245882
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040659146.2 → XP_040515080.1  protein NPAT isoform X1

      Conserved Domains (1) summary
      TIGR03835
      Location:658 → 877
      termin_org_DnaJ; terminal organelle assembly protein TopJ

    2. XM_040659148.2 → XP_040515082.1  protein NPAT isoform X3

      Conserved Domains (1) summary
      TIGR03835
      Location:656 → 875
      termin_org_DnaJ; terminal organelle assembly protein TopJ

    3. XM_040659147.2 → XP_040515081.1  protein NPAT isoform X2

      Conserved Domains (1) summary
      TIGR03835
      Location:657 → 876
      termin_org_DnaJ; terminal organelle assembly protein TopJ
    Nucleotide Protein Strain
    Heading Accession and Version

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