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    TAF1D TATA-box binding protein associated factor, RNA polymerase I subunit D [ Gallus gallus (chicken) ]

    Gene ID: 419002, updated on 17-Aug-2024

    Summary

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    Official Symbol
    TAF1Dprovided by CGNC
    Official Full Name
    TATA-box binding protein associated factor, RNA polymerase I subunit Dprovided by CGNC
    Primary source
    CGNC:12941
    See related
    Ensembl:ENSGALG00010008821
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Also known as
    JOSD3; OACA2; OACA3; SNORA32
    Orthologs
    human mouse all
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    Genomic context

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    See TAF1D in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 1 NC_052532.1 (185689261..185700123)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 1 NC_052573.1 (185733259..185744134)

    Chromosome 1 - NC_052532.1Genomic Context describing neighboring genes Neighboring gene V-set and transmembrane domain containing 5 Neighboring gene mediator complex subunit 17 Neighboring gene C11orf54 homolog Neighboring gene small nucleolar RNA SNORD5 Neighboring gene small nucleolar RNA SNORA40 Neighboring gene small nucleolar RNA SNORA1 Neighboring gene small nucleolar RNA Z40 Neighboring gene small nucleolar RNA SNORA18 Neighboring gene small nucleolar RNA SNORA8 Neighboring gene centrosomal protein 295 Neighboring gene small nucleolar RNA U2-19 Neighboring gene uncharacterized LOC121109453

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Systematic identification and characterization of chicken (Gallus gallus) ncRNAs. Zhang Y, et al. Nucleic Acids Res, 2009 Oct. PMID 19720738, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of RNA polymerase transcription factor SL1 complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    TATA box-binding protein-associated factor RNA polymerase I subunit D
    Names
    Josephin domain containing 3
    TATA box binding protein (TBP)-associated factor, RNA polymerase I, D, 41kDa
    small nucleolar RNA, H/ACA box 32

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052532.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      185689261..185700123
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040671911.2 → XP_040527845.1  TATA box-binding protein-associated factor RNA polymerase I subunit D

      UniProtKB/TrEMBL
      A0A8V0XUW2

    2. XM_040671921.2 → XP_040527855.1  TATA box-binding protein-associated factor RNA polymerase I subunit D

      UniProtKB/TrEMBL
      A0A8V0XUW2

    3. XM_040671919.2 → XP_040527853.1  TATA box-binding protein-associated factor RNA polymerase I subunit D

      UniProtKB/TrEMBL
      A0A8V0XUW2

    4. XM_417196.8 → XP_417196.2  TATA box-binding protein-associated factor RNA polymerase I subunit D

      UniProtKB/TrEMBL
      A0A8V0XUW2

    5. XM_015280465.4 → XP_015135951.2  TATA box-binding protein-associated factor RNA polymerase I subunit D

      UniProtKB/TrEMBL
      A0A8V0XUW2

    6. XM_040671918.2 → XP_040527852.1  TATA box-binding protein-associated factor RNA polymerase I subunit D

      UniProtKB/TrEMBL
      A0A8V0XUW2

    7. XM_015280475.4 → XP_015135961.2  TATA box-binding protein-associated factor RNA polymerase I subunit D

      UniProtKB/TrEMBL
      A0A8V0XUW2

    8. XM_040671923.2 → XP_040527857.1  TATA box-binding protein-associated factor RNA polymerase I subunit D

      UniProtKB/TrEMBL
      A0A8V0XUW2

    9. XM_040671922.2 → XP_040527856.1  TATA box-binding protein-associated factor RNA polymerase I subunit D

      UniProtKB/TrEMBL
      A0A8V0XUW2

    10. XM_040671924.2 → XP_040527858.1  TATA box-binding protein-associated factor RNA polymerase I subunit D

      UniProtKB/TrEMBL
      A0A8V0XUW2

    11. XM_046899819.1 → XP_046755775.1  TATA box-binding protein-associated factor RNA polymerase I subunit D

      UniProtKB/TrEMBL
      A0A8V0XUW2
      Related
      ENSGALP00010012028.1, ENSGALT00010020925.1

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052573.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      185733259..185744134
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046909312.1 → XP_046765268.1  TATA box-binding protein-associated factor RNA polymerase I subunit D

    2. XM_046909314.1 → XP_046765270.1  TATA box-binding protein-associated factor RNA polymerase I subunit D

    3. XM_040661855.2 → XP_040517789.1  TATA box-binding protein-associated factor RNA polymerase I subunit D

    4. XM_046909315.1 → XP_046765271.1  TATA box-binding protein-associated factor RNA polymerase I subunit D

    5. XM_046909310.1 → XP_046765266.1  TATA box-binding protein-associated factor RNA polymerase I subunit D

    6. XM_046909311.1 → XP_046765267.1  TATA box-binding protein-associated factor RNA polymerase I subunit D

    7. XM_046909313.1 → XP_046765269.1  TATA box-binding protein-associated factor RNA polymerase I subunit D

    8. XM_040661852.2 → XP_040517786.1  TATA box-binding protein-associated factor RNA polymerase I subunit D

    9. XM_040661854.2 → XP_040517788.1  TATA box-binding protein-associated factor RNA polymerase I subunit D

    10. XM_040661853.2 → XP_040517787.1  TATA box-binding protein-associated factor RNA polymerase I subunit D

    11. XM_040661856.2 → XP_040517790.1  TATA box-binding protein-associated factor RNA polymerase I subunit D

    Nucleotide Protein Strain
    Heading Accession and Version

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