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    CACFD1 calcium channel flower domain containing 1 [ Gallus gallus (chicken) ]

    Gene ID: 417151, updated on 17-Aug-2024

    Summary

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    Official Symbol
    CACFD1provided by CGNC
    Official Full Name
    calcium channel flower domain containing 1provided by CGNC
    Primary source
    CGNC:50452
    See related
    Ensembl:ENSGALG00010028870
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Also known as
    C9orf7; FLOWER; D9S2135; C17H9ORF7
    Orthologs
    human mouse all
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    Genomic context

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    See CACFD1 in Genome Data Viewer
    Location:
    chromosome: 17
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 17 NC_052548.1 (7533627..7543151)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 17 NC_052589.1 (6945272..6954798)

    Chromosome 17 - NC_052548.1Genomic Context describing neighboring genes Neighboring gene serine/threonine kinase like domain containing 1 Neighboring gene REX4 homolog, 3'-5' exonuclease Neighboring gene ADAM metallopeptidase with thrombospondin type 1 motif 13 Neighboring gene uncharacterized LOC101749173 Neighboring gene solute carrier family 2 member 6

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    calcium channel flower homolog
    Names
    calcium channel flower domain-containing protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001277657.2 → NP_001264586.1  calcium channel flower homolog

      Status: PROVISIONAL

      Source sequence(s)
      JAENSK010000308
      UniProtKB/TrEMBL
      A0A1D5PHF8
      Related
      ENSGALP00010042958.1, ENSGALT00010069832.1
      Conserved Domains (1) summary
      smart01077
      Location:36 → 144
      Cg6151-P; Uncharacterized conserved protein CG6151-P

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052548.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      7533627..7543151
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040649057.2 → XP_040504991.1  calcium channel flower homolog isoform X1

      Conserved Domains (1) summary
      cl10918
      Location:36 → 110
      Cg6151-P; Uncharacterized conserved protein CG6151-P

    2. XM_040649058.1 → XP_040504992.1  calcium channel flower homolog isoform X2

      Conserved Domains (1) summary
      smart01077
      Location:20 → 122
      Cg6151-P; Uncharacterized conserved protein CG6151-P

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052589.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      6945272..6954798
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046928917.1 → XP_046784873.1  calcium channel flower homolog isoform X1

    2. XM_046928919.1 → XP_046784875.1  calcium channel flower homolog isoform X2

    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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