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    KDELC1 KDEL motif containing 1 [ Gallus gallus (chicken) ]

    Gene ID: 418766, updated on 17-Aug-2024

    Summary

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    Symbol
    KDELC1provided by CGNC
    Full Name
    KDEL motif containing 1provided by CGNC
    Primary source
    CGNC:12654
    See related
    Ensembl:ENSGALG00010006063
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See KDELC1 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 1 NC_052532.1 (142817708..142828539)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 1 NC_052573.1 (142807578..142818409)

    Chromosome 1 - NC_052532.1Genomic Context describing neighboring genes Neighboring gene ERCC excision repair 5, endonuclease Neighboring gene basic, immunoglobulin-like variable motif containing Neighboring gene testis expressed 30 Neighboring gene methyltransferase like 21C Neighboring gene tripeptidyl peptidase 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables glucosyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endomembrane system IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein O-glucosyltransferase 2
    Names
    KDEL (Lys-Asp-Glu-Leu) containing 1
    XP_040513619.1
    XP_416963.2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052532.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      142817708..142828539
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_416963.8 → XP_416963.2  protein O-glucosyltransferase 2

      UniProtKB/TrEMBL
      E1BSM9
      Related
      ENSGALP00010008516.1, ENSGALT00010014499.1
      Conserved Domains (2) summary
      smart00557
      Location:28 → 128
      IG_FLMN; Filamin-type immunoglobulin domains
      cl23835
      Location:148 → 500
      Glyco_transf_90; Glycosyl transferase family 90

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052573.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      142807578..142818409
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040657685.2 → XP_040513619.1  protein O-glucosyltransferase 2

      UniProtKB/TrEMBL
      E1BSM9
      Conserved Domains (2) summary
      smart00557
      Location:28 → 128
      IG_FLMN; Filamin-type immunoglobulin domains
      cl23835
      Location:148 → 500
      Glyco_transf_90; Glycosyl transferase family 90
    Nucleotide Protein
    Heading Accession and Version

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