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    LCORL ligand dependent nuclear receptor corepressor like [ Gallus gallus (chicken) ]

    Gene ID: 422820, updated on 3-Dec-2024

    Summary

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    Symbol
    LCORLprovided by CGNC
    Full Name
    ligand dependent nuclear receptor corepressor likeprovided by CGNC
    Primary source
    CGNC:10728
    See related
    Ensembl:ENSGALG00010010971
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See LCORL in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 4 NC_052535.1 (75353941..75426494)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 4 NC_052576.1 (75331194..75403760)

    Chromosome 4 - NC_052535.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101750905 Neighboring gene uncharacterized LOC121110525 Neighboring gene non-SMC condensin I complex subunit G Neighboring gene family with sequence similarity 184 member B Neighboring gene mediator complex subunit 28

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ligand-dependent nuclear receptor corepressor-like protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001031160.3 → NP_001026331.2  ligand-dependent nuclear receptor corepressor-like protein isoform 1

      Status: VALIDATED

      Source sequence(s)
      JAENSK010000074
      UniProtKB/Swiss-Prot
      Q5ZJK5
      UniProtKB/TrEMBL
      A0A8V0YB81
      Related
      ENSGALP00010014895.1, ENSGALT00010026271.1
      Conserved Domains (1) summary
      pfam05225
      Location:524 → 569
      HTH_psq; helix-turn-helix, Psq domain

    2. NM_001389437.2 → NP_001376366.1  ligand-dependent nuclear receptor corepressor-like protein isoform 2

      Status: VALIDATED

      Source sequence(s)
      JAENSK010000074

    3. NM_001389438.2 → NP_001376367.1  ligand-dependent nuclear receptor corepressor-like protein isoform 3

      Status: VALIDATED

      Source sequence(s)
      JAENSK010000074
      UniProtKB/TrEMBL
      A0A8V0YB86
      Related
      ENSGALP00010014901.1, ENSGALT00010026277.1

    4. NM_001397492.1 → NP_001384421.1  ligand-dependent nuclear receptor corepressor-like protein isoform 4

      Status: VALIDATED

      Source sequence(s)
      JAENSK010000074
      UniProtKB/TrEMBL
      A0A8V0YB81, A0A8V0YFW7
      Related
      ENSGALP00010014898.1, ENSGALT00010026274.1

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052535.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      75353941..75426494
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052576.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      75331194..75403760
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046916277.1 → XP_046772233.1  ligand-dependent nuclear receptor corepressor-like protein isoform X2

    2. XM_046916276.1 → XP_046772232.1  ligand-dependent nuclear receptor corepressor-like protein isoform X1

    3. XM_046916278.1 → XP_046772234.1  ligand-dependent nuclear receptor corepressor-like protein isoform X3

      UniProtKB/TrEMBL
      A0A8V0YB81

    4. XM_046916279.1 → XP_046772235.1  ligand-dependent nuclear receptor corepressor-like protein isoform X4

    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5ZJK5.2 GenPept UniProtKB/Swiss-Prot:Q5ZJK5

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials