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    ATRN attractin [ Gallus gallus (chicken) ]

    Gene ID: 422946, updated on 17-Aug-2024

    Summary

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    Official Symbol
    ATRNprovided by CGNC
    Official Full Name
    attractinprovided by CGNC
    Primary source
    CGNC:11975
    See related
    Ensembl:ENSGALG00010018021
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See ATRN in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    31
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 4 NC_052535.1 (88768297..88913643)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 4 NC_052576.1 (88571786..88716541)

    Chromosome 4 - NC_052535.1Genomic Context describing neighboring genes Neighboring gene kyphoscoliosis peptidase-like Neighboring gene dynein axonemal assembly factor 9 Neighboring gene transfer RNA leucine (anticodon CAG) Neighboring gene uncharacterized LOC107053330 Neighboring gene microRNA 1654-1 Neighboring gene uncharacterized LOC121110582 Neighboring gene GDNF family receptor alpha 4 Neighboring gene uncharacterized LOC107053331

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi apparatus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    attractin

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052535.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      88768297..88913643
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015286048.3 → XP_015141534.2  attractin isoform X1

      Related
      ENSGALP00010025906.1, ENSGALT00010043556.1
      Conserved Domains (7) summary
      smart00180
      Location:177 → 209
      EGF_Lam; Laminin-type epidermal growth factor-like domai
      cd00041
      Location:209 → 324
      CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
      cd00055
      Location:1135 → 1180
      EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
      sd00038
      Location:631 → 686
      Kelch; KELCH repeat [structural motif]
      pfam01437
      Location:1005 → 1056
      PSI; Plexin repeat
      cl02432
      Location:865 → 993
      CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain
      cl28614
      Location:423 → 686
      BTB; Broad-Complex, Tramtrack and Bric a brac

    2. XM_015286050.3 → XP_015141536.2  attractin isoform X3

      Conserved Domains (7) summary
      smart00180
      Location:177 → 209
      EGF_Lam; Laminin-type epidermal growth factor-like domai
      cd00041
      Location:209 → 324
      CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
      cd00055
      Location:1135 → 1180
      EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
      sd00038
      Location:631 → 686
      Kelch; KELCH repeat [structural motif]
      pfam01437
      Location:1005 → 1056
      PSI; Plexin repeat
      cl02432
      Location:865 → 993
      CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain
      cl28614
      Location:423 → 686
      BTB; Broad-Complex, Tramtrack and Bric a brac

    3. XM_015286049.3 → XP_015141535.2  attractin isoform X2

      Conserved Domains (7) summary
      smart00180
      Location:177 → 209
      EGF_Lam; Laminin-type epidermal growth factor-like domai
      cd00041
      Location:209 → 324
      CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
      cd00055
      Location:1135 → 1180
      EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
      sd00038
      Location:631 → 686
      Kelch; KELCH repeat [structural motif]
      pfam01437
      Location:1005 → 1056
      PSI; Plexin repeat
      cl02432
      Location:865 → 993
      CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain
      cl28614
      Location:423 → 686
      BTB; Broad-Complex, Tramtrack and Bric a brac

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052576.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      88571786..88716541
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040670044.2 → XP_040525978.1  attractin isoform X4

      UniProtKB/TrEMBL
      A0A8V0ZBQ2
      Conserved Domains (6) summary
      smart00180
      Location:80 → 112
      EGF_Lam; Laminin-type epidermal growth factor-like domai
      PHA03098
      Location:326 → 589
      PHA03098; kelch-like protein; Provisional
      cd00041
      Location:112 → 227
      CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
      cd00055
      Location:1038 → 1083
      EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
      sd00038
      Location:534 → 589
      Kelch; KELCH repeat [structural motif]
      cl02432
      Location:768 → 896
      CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain

    2. XM_040670046.2 → XP_040525980.1  attractin isoform X6

      Conserved Domains (6) summary
      smart00180
      Location:80 → 112
      EGF_Lam; Laminin-type epidermal growth factor-like domai
      PHA03098
      Location:326 → 589
      PHA03098; kelch-like protein; Provisional
      cd00041
      Location:112 → 227
      CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
      cd00055
      Location:1038 → 1083
      EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
      sd00038
      Location:534 → 589
      Kelch; KELCH repeat [structural motif]
      cl02432
      Location:768 → 896
      CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain

    3. XM_040670045.2 → XP_040525979.1  attractin isoform X5

      Conserved Domains (6) summary
      smart00180
      Location:80 → 112
      EGF_Lam; Laminin-type epidermal growth factor-like domai
      PHA03098
      Location:326 → 589
      PHA03098; kelch-like protein; Provisional
      cd00041
      Location:112 → 227
      CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
      cd00055
      Location:1038 → 1083
      EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
      sd00038
      Location:534 → 589
      Kelch; KELCH repeat [structural motif]
      cl02432
      Location:768 → 896
      CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain
    Nucleotide Protein
    Heading Accession and Version

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