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    SUPT20H SPT20 homolog, SAGA complex component [ Gallus gallus (chicken) ]

    Gene ID: 418896, updated on 3-Dec-2024

    Summary

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    Official Symbol
    SUPT20Hprovided by CGNC
    Official Full Name
    SPT20 homolog, SAGA complex componentprovided by CGNC
    Primary source
    CGNC:12806
    See related
    Ensembl:ENSGALG00010006246
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Also known as
    FAM48A
    Orthologs
    human mouse all
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    Genomic context

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    See SUPT20H in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    24
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 1 NC_052532.1 (172158606..172195771)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 1 NC_052573.1 (172236024..172272369)

    Chromosome 1 - NC_052532.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124417462 Neighboring gene uncharacterized LOC107052041 Neighboring gene exosome component 8 Neighboring gene ALG5 dolichyl-phosphate beta-glucosyltransferase Neighboring gene SMAD family member 9

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables transcription coregulator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of SAGA complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription factor SPT20 homolog
    Names
    family with sequence similarity 48, member A
    protein FAM48A
    suppressor of Ty 20 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001006275.1 → NP_001006275.1  transcription factor SPT20 homolog

      See identical proteins and their annotated locations for NP_001006275.1

      Status: PROVISIONAL

      Source sequence(s)
      AJ719513
      UniProtKB/Swiss-Prot
      Q5ZM71
      UniProtKB/TrEMBL
      A0A8V0XUT5
      Conserved Domains (1) summary
      pfam12090
      Location:63 → 225
      Spt20; Spt20 family

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052532.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      172158606..172195771
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015277765.4 → XP_015133251.1  transcription factor SPT20 homolog isoform X5

      UniProtKB/TrEMBL
      A0A8V0XS14
      Conserved Domains (1) summary
      pfam12090
      Location:64 → 226
      Spt20; Spt20 family

    2. XM_015277769.4 → XP_015133255.1  transcription factor SPT20 homolog isoform X7

      UniProtKB/TrEMBL
      A0A8V0XKQ4, A0A8V0XS14
      Related
      ENSGALP00010008762.1, ENSGALT00010014875.1
      Conserved Domains (1) summary
      pfam12090
      Location:64 → 226
      Spt20; Spt20 family

    3. XM_015277782.4 → XP_015133268.1  transcription factor SPT20 homolog isoform X14

      UniProtKB/TrEMBL
      A0A8V0XUT5
      Conserved Domains (1) summary
      pfam12090
      Location:64 → 226
      Spt20; Spt20 family

    4. XM_025150499.3 → XP_025006267.1  transcription factor SPT20 homolog isoform X17

      UniProtKB/TrEMBL
      A0A8V0XUT5
      Conserved Domains (1) summary
      pfam12090
      Location:77 → 216
      Spt20; Spt20 family

    5. XM_040699989.2 → XP_040555923.1  transcription factor SPT20 homolog isoform X6

      UniProtKB/TrEMBL
      A0A8V0XS14
      Conserved Domains (1) summary
      pfam12090
      Location:77 → 216
      Spt20; Spt20 family

    6. XM_025150489.3 → XP_025006257.1  transcription factor SPT20 homolog isoform X10

      UniProtKB/TrEMBL
      A0A8V0XS14
      Conserved Domains (1) summary
      pfam12090
      Location:77 → 216
      Spt20; Spt20 family

    7. XM_040700027.2 → XP_040555961.1  transcription factor SPT20 homolog isoform X16

      UniProtKB/TrEMBL
      A0A8V0XUT5
      Related
      ENSGALP00010008760.1, ENSGALT00010014872.1
      Conserved Domains (1) summary
      pfam12090
      Location:77 → 216
      Spt20; Spt20 family

    8. XM_040700031.2 → XP_040555965.1  transcription factor SPT20 homolog isoform X19

      UniProtKB/TrEMBL
      A0A8V0XUT5
      Conserved Domains (1) summary
      pfam12090
      Location:77 → 216
      Spt20; Spt20 family

    9. XM_015277793.4 → XP_015133279.1  transcription factor SPT20 homolog isoform X21

      UniProtKB/TrEMBL
      A0A8V0XS14
      Conserved Domains (1) summary
      pfam12090
      Location:63 → 225
      Spt20; Spt20 family

    10. XM_040699995.2 → XP_040555929.1  transcription factor SPT20 homolog isoform X8

      UniProtKB/TrEMBL
      A0A8V0XS14
      Related
      ENSGALP00010008754.1, ENSGALT00010014863.1
      Conserved Domains (1) summary
      pfam12090
      Location:76 → 215
      Spt20; Spt20 family

    11. XM_040700021.2 → XP_040555955.1  transcription factor SPT20 homolog isoform X15

      UniProtKB/TrEMBL
      A0A8V0XUT5
      Conserved Domains (1) summary
      pfam12090
      Location:76 → 215
      Spt20; Spt20 family

    12. XM_040699991.2 → XP_040555925.1  transcription factor SPT20 homolog isoform X9

      UniProtKB/TrEMBL
      A0A8V0XS14
      Conserved Domains (1) summary
      pfam12090
      Location:76 → 215
      Spt20; Spt20 family

    13. XM_040700002.2 → XP_040555936.1  transcription factor SPT20 homolog isoform X11

      UniProtKB/TrEMBL
      A0A8V0XS14
      Conserved Domains (1) summary
      pfam12090
      Location:76 → 215
      Spt20; Spt20 family

    14. XM_015277786.4 → XP_015133272.1  transcription factor SPT20 homolog isoform X18

      UniProtKB/TrEMBL
      A0A8V0XUT5
      Conserved Domains (1) summary
      pfam12090
      Location:63 → 225
      Spt20; Spt20 family

    15. XM_040700034.2 → XP_040555968.1  transcription factor SPT20 homolog isoform X20

      UniProtKB/TrEMBL
      A0A8V0XUT5
      Conserved Domains (1) summary
      pfam12090
      Location:76 → 215
      Spt20; Spt20 family

    16. XM_015277740.4 → XP_015133226.1  transcription factor SPT20 homolog isoform X1

      UniProtKB/TrEMBL
      A0A8V0XUT5
      Conserved Domains (1) summary
      pfam12090
      Location:64 → 226
      Spt20; Spt20 family

    17. XM_015277772.4 → XP_015133258.1  transcription factor SPT20 homolog isoform X12

      UniProtKB/TrEMBL
      A0A8V0XUT5
      Conserved Domains (1) summary
      pfam12090
      Location:64 → 226
      Spt20; Spt20 family

    18. XM_015277755.4 → XP_015133241.1  transcription factor SPT20 homolog isoform X3

      UniProtKB/TrEMBL
      A0A8V0XUT5
      Conserved Domains (1) summary
      pfam12090
      Location:64 → 226
      Spt20; Spt20 family

    19. XM_015277779.4 → XP_015133265.1  transcription factor SPT20 homolog isoform X13

      UniProtKB/TrEMBL
      A0A8V0XUT5
      Conserved Domains (1) summary
      pfam12090
      Location:64 → 226
      Spt20; Spt20 family

    20. XM_015277745.4 → XP_015133231.1  transcription factor SPT20 homolog isoform X2

      UniProtKB/TrEMBL
      A0A8V0XUT5
      Conserved Domains (1) summary
      pfam12090
      Location:63 → 225
      Spt20; Spt20 family

    21. XM_015277763.4 → XP_015133249.1  transcription factor SPT20 homolog isoform X4

      UniProtKB/TrEMBL
      A0A8V0XUT5
      Conserved Domains (1) summary
      pfam12090
      Location:63 → 225
      Spt20; Spt20 family

    RNA

    1. XR_003075172.3 RNA Sequence

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052573.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      172236024..172272369
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046908270.1 → XP_046764226.1  transcription factor SPT20 homolog isoform X5

      UniProtKB/TrEMBL
      A0A8V0XS14

    2. XM_046908272.1 → XP_046764228.1  transcription factor SPT20 homolog isoform X7

      UniProtKB/TrEMBL
      A0A8V0XKQ4, A0A8V0XS14

    3. XM_046908279.1 → XP_046764235.1  transcription factor SPT20 homolog isoform X14

      UniProtKB/TrEMBL
      A0A8V0XUT5

    4. XM_046908282.1 → XP_046764238.1  transcription factor SPT20 homolog isoform X17

      UniProtKB/TrEMBL
      A0A8V0XUT5

    5. XM_046908271.1 → XP_046764227.1  transcription factor SPT20 homolog isoform X6

      UniProtKB/TrEMBL
      A0A8V0XS14

    6. XM_046908275.1 → XP_046764231.1  transcription factor SPT20 homolog isoform X10

      UniProtKB/TrEMBL
      A0A8V0XS14

    7. XM_046908281.1 → XP_046764237.1  transcription factor SPT20 homolog isoform X16

      UniProtKB/TrEMBL
      A0A8V0XUT5

    8. XM_046908284.1 → XP_046764240.1  transcription factor SPT20 homolog isoform X19

      UniProtKB/TrEMBL
      A0A8V0XUT5

    9. XM_046908286.1 → XP_046764242.1  transcription factor SPT20 homolog isoform X21

      UniProtKB/TrEMBL
      A0A8V0XS14

    10. XM_046908273.1 → XP_046764229.1  transcription factor SPT20 homolog isoform X8

      UniProtKB/TrEMBL
      A0A8V0XS14

    11. XM_046908280.1 → XP_046764236.1  transcription factor SPT20 homolog isoform X15

      UniProtKB/TrEMBL
      A0A8V0XUT5

    12. XM_046908274.1 → XP_046764230.1  transcription factor SPT20 homolog isoform X9

      UniProtKB/TrEMBL
      A0A8V0XS14

    13. XM_046908276.1 → XP_046764232.1  transcription factor SPT20 homolog isoform X11

      UniProtKB/TrEMBL
      A0A8V0XS14

    14. XM_046908283.1 → XP_046764239.1  transcription factor SPT20 homolog isoform X18

      UniProtKB/TrEMBL
      A0A8V0XUT5

    15. XM_046908285.1 → XP_046764241.1  transcription factor SPT20 homolog isoform X20

      UniProtKB/TrEMBL
      A0A8V0XUT5

    16. XM_046908266.1 → XP_046764222.1  transcription factor SPT20 homolog isoform X1

      UniProtKB/TrEMBL
      A0A8V0XUT5

    17. XM_046908277.1 → XP_046764233.1  transcription factor SPT20 homolog isoform X12

      UniProtKB/TrEMBL
      A0A8V0XUT5

    18. XM_046908268.1 → XP_046764224.1  transcription factor SPT20 homolog isoform X3

      UniProtKB/TrEMBL
      A0A8V0XUT5

    19. XM_046908278.1 → XP_046764234.1  transcription factor SPT20 homolog isoform X13

      UniProtKB/TrEMBL
      A0A8V0XUT5

    20. XM_046908267.1 → XP_046764223.1  transcription factor SPT20 homolog isoform X2

      UniProtKB/TrEMBL
      A0A8V0XUT5

    21. XM_046908269.1 → XP_046764225.1  transcription factor SPT20 homolog isoform X4

      UniProtKB/TrEMBL
      A0A8V0XUT5

    RNA

    1. XR_006932726.1 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5ZM71.1 GenPept UniProtKB/Swiss-Prot:Q5ZM71

    Gene LinkOut

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    Molecular Biology Databases
    Research Materials