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    PSME4 proteasome activator subunit 4 [ Gallus gallus (chicken) ]

    Gene ID: 421218, updated on 3-Dec-2024

    Summary

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    Symbol
    PSME4provided by CGNC
    Full Name
    proteasome activator subunit 4provided by CGNC
    Primary source
    CGNC:6189
    See related
    Ensembl:ENSGALG00010016938
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See PSME4 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    48
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 3 NC_052534.1 (3125733..3190602)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 3 NC_052575.1 (3049416..3114284)

    Chromosome 3 - NC_052534.1Genomic Context describing neighboring genes Neighboring gene acylphosphatase 2 Neighboring gene uncharacterized LOC121110244 Neighboring gene G protein-coupled receptor 75 Neighboring gene toll-like receptor 15 Neighboring gene endoplasmic reticulum lectin 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables lysine-acetylated histone binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables peptidase activator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables proteasome binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in proteasomal ubiquitin-independent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of spermatoproteasome complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    proteasome activator complex subunit 4
    Names
    proteasome (prosome, macropain) activator subunit 4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001006393.3 → NP_001006393.3  proteasome activator complex subunit 4

      Status: VALIDATED

      Source sequence(s)
      JAENSK010000060
      UniProtKB/TrEMBL
      A0A8V0Z5W0
      Related
      ENSGALP00010023880.1, ENSGALT00010040916.1

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052534.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      3125733..3190602
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040696990.2 → XP_040552924.1  proteasome activator complex subunit 4 isoform X1

      UniProtKB/TrEMBL
      A0A8V0YYM9, A0A8V0Z0G8
      Related
      ENSGALP00010023892.1, ENSGALT00010040928.1
      Conserved Domains (1) summary
      sd00044
      Location:1569 → 1589
      HEAT; HEAT repeat [structural motif]

    2. XM_015283354.4 → XP_015138840.2  proteasome activator complex subunit 4 isoform X2

      UniProtKB/TrEMBL
      A0A8V0YYM9, A0A8V0Z5Y3
      Related
      ENSGALP00010023895.1, ENSGALT00010040931.1
      Conserved Domains (1) summary
      sd00044
      Location:1549 → 1569
      HEAT; HEAT repeat [structural motif]

    RNA

    1. XR_006938645.1 RNA Sequence

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052575.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      3049416..3114284
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046913526.1 → XP_046769482.1  proteasome activator complex subunit 4 isoform X1

      UniProtKB/TrEMBL
      A0A8V0YYM9, A0A8V0Z0G8

    2. XM_046913528.1 → XP_046769484.1  proteasome activator complex subunit 4 isoform X2

      UniProtKB/TrEMBL
      A0A8V0YYM9, A0A8V0Z5Y3

    RNA

    1. XR_006933928.1 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

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