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    CNOT9 CCR4-NOT transcription complex subunit 9 [ Gallus gallus (chicken) ]

    Gene ID: 424215, updated on 17-Aug-2024

    Summary

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    Official Symbol
    CNOT9provided by CGNC
    Official Full Name
    CCR4-NOT transcription complex subunit 9provided by CGNC
    Primary source
    CGNC:8665
    See related
    Ensembl:ENSGALG00010021663
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Also known as
    RQCD1
    Orthologs
    human mouse all
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    Genomic context

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    See CNOT9 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 7 NC_052538.1 (22114954..22126508, complement)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 7 NC_052579.1 (22034673..22046208, complement)

    Chromosome 7 - NC_052538.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein 142 Neighboring gene phospholipase C delta 4 Neighboring gene uncharacterized LOC112532794 Neighboring gene ubiquitin specific peptidase 37 Neighboring gene villin 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in mRNA catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of translation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of CCR4-NOT complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of CCR4-NOT core complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in P-body IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    CCR4-NOT transcription complex subunit 9
    Names
    RCD1 required for cell differentiation1 homolog
    cell differentiation protein RCD1 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001006521.3 → NP_001006521.2  CCR4-NOT transcription complex subunit 9

      See identical proteins and their annotated locations for NP_001006521.2

      Status: VALIDATED

      Source sequence(s)
      JAENSK010000236
      UniProtKB/TrEMBL
      A0A1D5PVC4
      Related
      ENSGALP00010031544.1, ENSGALT00010052638.1
      Conserved Domains (1) summary
      pfam04078
      Location:25 → 283
      Rcd1; Cell differentiation family, Rcd1-like

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052538.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      22114954..22126508 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015289800.4 → XP_015145286.1  CCR4-NOT transcription complex subunit 9 isoform X1

      UniProtKB/TrEMBL
      A0A8V0ZJK7
      Related
      ENSGALP00010031549.1, ENSGALT00010052643.1
      Conserved Domains (1) summary
      pfam04078
      Location:25 → 285
      Rcd1; Cell differentiation family, Rcd1-like

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052579.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      22034673..22046208 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046921429.1 → XP_046777385.1  CCR4-NOT transcription complex subunit 9 isoform X1

      UniProtKB/TrEMBL
      A0A8V0ZJK7
      Conserved Domains (1) summary
      pfam04078
      Location:25 → 285
      Rcd1; Cell differentiation family, Rcd1-like
    Nucleotide Protein Strain
    Heading Accession and Version

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