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    GAR1 GAR1 ribonucleoprotein [ Gallus gallus (chicken) ]

    Gene ID: 422697, updated on 17-Aug-2024

    Summary

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    Symbol
    GAR1provided by CGNC
    Full Name
    GAR1 ribonucleoproteinprovided by CGNC
    Primary source
    CGNC:14104
    See related
    Ensembl:ENSGALG00010003838
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Also known as
    NOLA1
    Orthologs
    human mouse all
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    Genomic context

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    See GAR1 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 4 NC_052535.1 (57635847..57640318, complement)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 4 NC_052576.1 (57638895..57658444, complement)

    Chromosome 4 - NC_052535.1Genomic Context describing neighboring genes Neighboring gene epidermal growth factor Neighboring gene leucine rich repeat, Ig-like and transmembrane domains 3 Neighboring gene retinal pigment epithelium-derived rhodopsin homolog Neighboring gene complement factor I Neighboring gene phospholipase A2 group XIIA Neighboring gene microRNA 7466

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables box H/ACA snoRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in ribosome biogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in snoRNA guided rRNA pseudouridine synthesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of box H/ACA snoRNP complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    H/ACA ribonucleoprotein complex subunit 1
    Names
    GAR1 homolog, ribonucleoprotein
    GAR1 ribonucleoprotein homolog
    nucleolar protein family A, member 1 (H/ACA small nucleolar RNPs)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052535.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      57635847..57640318 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_004935955.5 → XP_004936012.2  H/ACA ribonucleoprotein complex subunit 1 isoform X1

      Related
      ENSGALP00010005220.1, ENSGALT00010008876.1
      Conserved Domains (1) summary
      COG3277
      Location:68 → 163
      GAR1; rRNA processing protein Gar1 [Translation, ribosomal structure and biogenesis]

    2. XM_046940590.1 → XP_046796546.1  H/ACA ribonucleoprotein complex subunit 1 isoform X1

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052576.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      57638895..57658444 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040670205.2 → XP_040526139.1  H/ACA ribonucleoprotein complex subunit 1 isoform X2

      Conserved Domains (1) summary
      COG3277
      Location:68 → 163
      GAR1; rRNA processing protein Gar1 [Translation, ribosomal structure and biogenesis]

    2. XM_046916835.1 → XP_046772791.1  H/ACA ribonucleoprotein complex subunit 1 isoform X1

    3. XM_040670204.2 → XP_040526138.1  H/ACA ribonucleoprotein complex subunit 1 isoform X1

      Conserved Domains (1) summary
      COG3277
      Location:68 → 163
      GAR1; rRNA processing protein Gar1 [Translation, ribosomal structure and biogenesis]
    Nucleotide Protein Strain
    Heading Accession and Version

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