U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    FRAS1 Fraser extracellular matrix complex subunit 1 [ Gallus gallus (chicken) ]

    Gene ID: 422506, updated on 17-Aug-2024

    Summary

    Go to the top of the page Help
    Symbol
    FRAS1provided by CGNC
    Full Name
    Fraser extracellular matrix complex subunit 1provided by CGNC
    Primary source
    CGNC:7849
    See related
    Ensembl:ENSGALG00010008152
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See FRAS1 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    73
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 4 NC_052535.1 (34332197..34496233, complement)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 4 NC_052576.1 (34284254..34448257, complement)

    Chromosome 4 - NC_052535.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121110749 Neighboring gene RNA binding protein, mRNA processing factor Neighboring gene microRNA 6591 Neighboring gene dynactin subunit 6 Neighboring gene mitochondrial ribosomal protein L1 Neighboring gene CCR4-NOT transcription complex subunit 6 like Neighboring gene C-X-C motif chemokine ligand 13

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell communication IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    extracellular matrix protein FRAS1; extracellular matrix organizing protein FRAS1
    Names
    Fraser syndrome 1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052535.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      34332197..34496233 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_025150292.3 → XP_025006060.2  extracellular matrix organizing protein FRAS1 isoform X2

      UniProtKB/TrEMBL
      A0A8V0Y4M7
      Conserved Domains (7) summary
      pfam03302
      Location:538 → 912
      VSP; Giardia variant-specific surface protein
      PTZ00214
      Location:381 → 658
      PTZ00214; high cysteine membrane protein Group 4; Provisional
      smart00214
      Location:346 → 401
      VWC; von Willebrand factor (vWF) type C domain
      smart00261
      Location:936 → 978
      FU; Furin-like repeats
      TIGR00845
      Location:2488 → 2694
      caca; sodium/calcium exchanger 1
      TIGR01965
      Location:2157 → 2259
      VCBS_repeat; VCBS repeat
      pfam00093
      Location:156 → 213
      VWC; von Willebrand factor type C domain

    2. XM_420470.8 → XP_420470.5  extracellular matrix organizing protein FRAS1 isoform X1

      UniProtKB/TrEMBL
      A0A8V0XWE9
      Related
      ENSGALP00010011014.1, ENSGALT00010019466.1
      Conserved Domains (6) summary
      pfam03302
      Location:538 → 912
      VSP; Giardia variant-specific surface protein
      PTZ00214
      Location:381 → 658
      PTZ00214; high cysteine membrane protein Group 4; Provisional
      smart00214
      Location:346 → 401
      VWC; von Willebrand factor (vWF) type C domain
      TIGR00845
      Location:2535 → 2741
      caca; sodium/calcium exchanger 1
      TIGR01965
      Location:2204 → 2306
      VCBS_repeat; VCBS repeat
      pfam00093
      Location:156 → 213
      VWC; von Willebrand factor type C domain

    3. XM_015276618.4 → XP_015132104.2  extracellular matrix organizing protein FRAS1 isoform X3

      Conserved Domains (8) summary
      pfam03302
      Location:538 → 912
      VSP; Giardia variant-specific surface protein
      PTZ00214
      Location:398 → 658
      PTZ00214; high cysteine membrane protein Group 4; Provisional
      smart00214
      Location:346 → 401
      VWC; von Willebrand factor (vWF) type C domain
      TIGR00845
      Location:2535 → 2741
      caca; sodium/calcium exchanger 1
      TIGR01965
      Location:2204 → 2306
      VCBS_repeat; VCBS repeat
      pfam00093
      Location:156 → 213
      VWC; von Willebrand factor type C domain
      cl17735
      Location:218 → 275
      VWC; von Willebrand factor type C domain
      cl02522
      Location:2778 → 2849
      Calx-beta; Calx-beta domain

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052576.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      34284254..34448257 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040671429.2 → XP_040527363.1  extracellular matrix organizing protein FRAS1 isoform X2

      UniProtKB/TrEMBL
      A0A8V0Y4M7
      Conserved Domains (7) summary
      pfam03302
      Location:538 → 912
      VSP; Giardia variant-specific surface protein
      PTZ00214
      Location:381 → 658
      PTZ00214; high cysteine membrane protein Group 4; Provisional
      smart00214
      Location:156 → 213
      VWC; von Willebrand factor (vWF) type C domain
      smart00261
      Location:936 → 978
      FU; Furin-like repeats
      TIGR00845
      Location:2488 → 2694
      caca; sodium/calcium exchanger 1
      TIGR01965
      Location:2157 → 2259
      VCBS_repeat; VCBS repeat
      pfam00093
      Location:26 → 84
      VWC; von Willebrand factor type C domain

    2. XM_040671428.2 → XP_040527362.1  extracellular matrix organizing protein FRAS1 isoform X1

      UniProtKB/TrEMBL
      A0A8V0XWE9
      Conserved Domains (6) summary
      pfam03302
      Location:538 → 912
      VSP; Giardia variant-specific surface protein
      PTZ00214
      Location:381 → 658
      PTZ00214; high cysteine membrane protein Group 4; Provisional
      smart00214
      Location:156 → 213
      VWC; von Willebrand factor (vWF) type C domain
      TIGR00845
      Location:2535 → 2741
      caca; sodium/calcium exchanger 1
      TIGR01965
      Location:2204 → 2306
      VCBS_repeat; VCBS repeat
      pfam00093
      Location:26 → 84
      VWC; von Willebrand factor type C domain

    3. XM_040671430.2 → XP_040527364.1  extracellular matrix organizing protein FRAS1 isoform X3

      Conserved Domains (8) summary
      pfam03302
      Location:538 → 912
      VSP; Giardia variant-specific surface protein
      PTZ00214
      Location:398 → 658
      PTZ00214; high cysteine membrane protein Group 4; Provisional
      smart00214
      Location:346 → 401
      VWC; von Willebrand factor (vWF) type C domain
      TIGR00845
      Location:2535 → 2741
      caca; sodium/calcium exchanger 1
      TIGR01965
      Location:2204 → 2306
      VCBS_repeat; VCBS repeat
      pfam00093
      Location:156 → 213
      VWC; von Willebrand factor type C domain
      cl17735
      Location:218 → 275
      VWC; von Willebrand factor type C domain
      cl02522
      Location:2778 → 2849
      Calx-beta; Calx-beta domain
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials