U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    KDM1B lysine demethylase 1B [ Gallus gallus (chicken) ]

    Gene ID: 420829, updated on 17-Aug-2024

    Summary

    Go to the top of the page Help
    Symbol
    KDM1Bprovided by CGNC
    Full Name
    lysine demethylase 1Bprovided by CGNC
    Primary source
    CGNC:9624
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Also known as
    AOF1
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See KDM1B in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    22
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 2 NC_052533.1 (60074038..60102671, complement)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 2 NC_052574.1 (60024322..60052943, complement)

    Chromosome 2 - NC_052533.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124418173 Neighboring gene ring finger protein 144B Neighboring gene uncharacterized LOC124417796 Neighboring gene DEK proto-oncogene Neighboring gene NHL repeat containing E3 ubiquitin protein ligase 1 Neighboring gene thiopurine S-methyltransferase

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables oxidoreductase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    lysine-specific histone demethylase 1B
    Names
    amine oxidase (flavin containing) domain 1
    lysine (K)-specific demethylase 1B
    XP_015131437.1
    XP_025003413.1
    XP_040519559.1
    XP_040519560.1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052533.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      60074038..60102671 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015275951.4 → XP_015131437.1  lysine-specific histone demethylase 1B isoform X2

      UniProtKB/TrEMBL
      E1BRG3
      Conserved Domains (2) summary
      PLN02328
      Location:300 → 817
      PLN02328; lysine-specific histone demethylase 1 homolog
      pfam07496
      Location:138 → 191
      zf-CW; CW-type Zinc Finger

    2. XM_025147645.3 → XP_025003413.1  lysine-specific histone demethylase 1B isoform X1

      Conserved Domains (2) summary
      PLN02328
      Location:376 → 893
      PLN02328; lysine-specific histone demethylase 1 homolog
      pfam07496
      Location:214 → 267
      zf-CW; CW-type Zinc Finger

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052574.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      60024322..60052943 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040663626.2 → XP_040519560.1  lysine-specific histone demethylase 1B isoform X2

      Conserved Domains (2) summary
      PLN02328
      Location:300 → 817
      PLN02328; lysine-specific histone demethylase 1 homolog
      pfam07496
      Location:138 → 191
      zf-CW; CW-type Zinc Finger

    2. XM_040663625.2 → XP_040519559.1  lysine-specific histone demethylase 1B isoform X1

      Conserved Domains (2) summary
      PLN02328
      Location:376 → 893
      PLN02328; lysine-specific histone demethylase 1 homolog
      pfam07496
      Location:214 → 267
      zf-CW; CW-type Zinc Finger
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.