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    TRPM1 transient receptor potential cation channel subfamily M member 1 [ Gallus gallus (chicken) ]

    Gene ID: 427494, updated on 17-Aug-2024

    Summary

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    Symbol
    TRPM1provided by CGNC
    Full Name
    transient receptor potential cation channel subfamily M member 1provided by CGNC
    Primary source
    CGNC:2818
    See related
    Ensembl:ENSGALG00010024748
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See TRPM1 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    33
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 10 NC_052541.1 (5618486..5749124)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 10 NC_052582.1 (5492627..5623549)

    Chromosome 10 - NC_052541.1Genomic Context describing neighboring genes Neighboring gene OTU deubiquitinase 7A Neighboring gene glucosaminyl (N-acetyl) transferase 3, mucin type Neighboring gene Kruppel like factor 13 Neighboring gene uncharacterized LOC121113485 Neighboring gene microRNA 204-2 Neighboring gene microRNA 1574 Neighboring gene uncharacterized LOC121111663 Neighboring gene myotubularin related protein 10 Neighboring gene FANCD2/FANCI-associated nuclease 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium channel activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in calcium ion transport into cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein tetramerization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transient receptor potential cation channel subfamily M member 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052541.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      5618486..5749124
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046899254.1 → XP_046755210.1  transient receptor potential cation channel subfamily M member 1 isoform X4

    2. XM_040706834.2 → XP_040562768.1  transient receptor potential cation channel subfamily M member 1 isoform X2

      Conserved Domains (1) summary
      TIGR00870
      Location:733 → 1149
      trp; transient-receptor-potential calcium channel protein

    3. XM_040706835.2 → XP_040562769.1  transient receptor potential cation channel subfamily M member 1 isoform X3

      Conserved Domains (1) summary
      TIGR00870
      Location:686 → 1108
      trp; transient-receptor-potential calcium channel protein

    4. XM_040706833.1 → XP_040562767.1  transient receptor potential cation channel subfamily M member 1 isoform X1

      UniProtKB/TrEMBL
      A0A8V1A1W4
      Related
      ENSGALP00010037170.1, ENSGALT00010060411.1
      Conserved Domains (1) summary
      TIGR00870
      Location:733 → 1155
      trp; transient-receptor-potential calcium channel protein

    5. XM_015278984.2 → XP_015134470.1  transient receptor potential cation channel subfamily M member 1 isoform X5

      Conserved Domains (2) summary
      pfam00520
      Location:783 → 1012
      Ion_trans; Ion transport protein
      pfam16519
      Location:1110 → 1161
      TRPM_tetra; Tetramerization domain of TRPM

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052582.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      5492627..5623549
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046925215.1 → XP_046781171.1  transient receptor potential cation channel subfamily M member 1 isoform X4

    2. XM_040680636.2 → XP_040536570.1  transient receptor potential cation channel subfamily M member 1 isoform X2

      Conserved Domains (1) summary
      TIGR00870
      Location:733 → 1149
      trp; transient-receptor-potential calcium channel protein

    3. XM_040680637.2 → XP_040536571.1  transient receptor potential cation channel subfamily M member 1 isoform X3

      Conserved Domains (1) summary
      TIGR00870
      Location:686 → 1108
      trp; transient-receptor-potential calcium channel protein

    4. XM_040680634.2 → XP_040536568.1  transient receptor potential cation channel subfamily M member 1 isoform X1

      UniProtKB/TrEMBL
      A0A8V1A1W4
      Conserved Domains (1) summary
      TIGR00870
      Location:733 → 1155
      trp; transient-receptor-potential calcium channel protein

    5. XM_040680635.1 → XP_040536569.1  transient receptor potential cation channel subfamily M member 1 isoform X1

      UniProtKB/TrEMBL
      A0A8V1A1W4
      Conserved Domains (1) summary
      TIGR00870
      Location:733 → 1155
      trp; transient-receptor-potential calcium channel protein

    6. XM_040680639.1 → XP_040536573.1  transient receptor potential cation channel subfamily M member 1 isoform X5

    Nucleotide Protein
    Heading Accession and Version

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