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    FIP1L1 factor interacting with PAPOLA and CPSF1 [ Gallus gallus (chicken) ]

    Gene ID: 422754, updated on 17-Aug-2024

    Summary

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    Official Symbol
    FIP1L1provided by CGNC
    Official Full Name
    factor interacting with PAPOLA and CPSF1provided by CGNC
    Primary source
    CGNC:10426
    See related
    Ensembl:ENSGALG00010014249
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See FIP1L1 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 4 NC_052535.1 (65238537..65275956, complement)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 4 NC_052576.1 (65222392..65259858, complement)

    Chromosome 4 - NC_052535.1Genomic Context describing neighboring genes Neighboring gene cysteine rich hydrophobic domain 2 Neighboring gene ligand of numb-protein X 1 Neighboring gene sec1 family domain containing 2 Neighboring gene RAS like family 11 member B

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of mRNA cleavage and polyadenylation specificity factor complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pre-mRNA 3'-end-processing factor FIP1
    Names
    FIP1 like 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052535.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      65238537..65275956 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_025150189.3 → XP_025005957.2  pre-mRNA 3'-end-processing factor FIP1 isoform X4

      UniProtKB/TrEMBL
      A0A8V0YQ64
      Related
      ENSGALP00010020160.1, ENSGALT00010034322.1
      Conserved Domains (1) summary
      cl02162
      Location:118 → 179
      Fip1; Fip1 motif

    2. XM_015285534.4 → XP_015141020.2  pre-mRNA 3'-end-processing factor FIP1 isoform X2

      UniProtKB/TrEMBL
      A0A8V0YQ64
      Conserved Domains (1) summary
      cl02162
      Location:118 → 179
      Fip1; Fip1 motif

    3. XM_025150190.3 → XP_025005958.2  pre-mRNA 3'-end-processing factor FIP1 isoform X5

      UniProtKB/TrEMBL
      A0A8V0YQ64
      Conserved Domains (1) summary
      cl02162
      Location:118 → 209
      Fip1; Fip1 motif

    4. XM_015285535.4 → XP_015141021.2  pre-mRNA 3'-end-processing factor FIP1 isoform X3

      UniProtKB/TrEMBL
      A0A8V0YQ64
      Related
      ENSGALP00010020163.1, ENSGALT00010034329.1
      Conserved Domains (1) summary
      cl02162
      Location:119 → 180
      Fip1; Fip1 motif

    5. XM_015285533.4 → XP_015141019.2  pre-mRNA 3'-end-processing factor FIP1 isoform X1

      UniProtKB/TrEMBL
      A0A8V0YQ64
      Conserved Domains (1) summary
      cl02162
      Location:119 → 180
      Fip1; Fip1 motif

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052576.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      65222392..65259858 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040671559.2 → XP_040527493.1  pre-mRNA 3'-end-processing factor FIP1 isoform X4

      UniProtKB/TrEMBL
      A0A8V0YQ64
      Conserved Domains (1) summary
      cl02162
      Location:118 → 179
      Fip1; Fip1 motif

    2. XM_040671557.2 → XP_040527491.1  pre-mRNA 3'-end-processing factor FIP1 isoform X2

      UniProtKB/TrEMBL
      A0A8V0YQ64
      Conserved Domains (1) summary
      cl02162
      Location:118 → 179
      Fip1; Fip1 motif

    3. XM_040671560.2 → XP_040527494.1  pre-mRNA 3'-end-processing factor FIP1 isoform X5

      UniProtKB/TrEMBL
      A0A8V0YQ64
      Conserved Domains (1) summary
      cl02162
      Location:118 → 209
      Fip1; Fip1 motif

    4. XM_040671558.2 → XP_040527492.1  pre-mRNA 3'-end-processing factor FIP1 isoform X3

      UniProtKB/TrEMBL
      A0A8V0YQ64
      Conserved Domains (1) summary
      pfam05182
      Location:138 → 180
      Fip1; Fip1 motif

    5. XM_040671556.2 → XP_040527490.1  pre-mRNA 3'-end-processing factor FIP1 isoform X1

      UniProtKB/TrEMBL
      A0A8V0YQ64
      Conserved Domains (1) summary
      pfam05182
      Location:138 → 180
      Fip1; Fip1 motif

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001031154.1: Suppressed sequence

      Description
      NM_001031154.1: This RefSeq was suppressed temporarily based on the calculation that the encoded protein was shorter than proteins from the putative ortholog from human: FIP1L1 (GeneID:81608).
    Nucleotide Protein Strain
    Heading Accession and Version

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