USP16 ubiquitin specific peptidase 16 [Gallus gallus (chicken)] - Gene

Summary

Symbol: USP16provided by CGNC
Full Name: ubiquitin specific peptidase 16provided by CGNC
Primary source: CGNC:11798
See related: Ensembl:ENSGALG00010009985
Gene type: protein coding
RefSeq status: MODEL
Organism: Gallus gallus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 1

Exon count:: 18

Annotation release	Status	Assembly	Chr	Location
106	current	bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2)	1	NC_052532.1 (104080411..104101300)
106	current	bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2)	1	NC_052573.1 (104169935..104190832)

Chromosome 1 - NC_052532.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Homology

NCBI Orthologs

Orthologs from OrthoDB

Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables cysteine-type deubiquitinase activity	IEA Inferred from Electronic Annotation more info	PubMed
enables cysteine-type endopeptidase activity	IEA Inferred from Electronic Annotation more info	PubMed
enables zinc ion binding	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in regulation of cell cycle	IEA Inferred from Electronic Annotation more info	PubMed
involved_in regulation of gene expression	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
located_in cytosol	IEA Inferred from Electronic Annotation more info	PubMed
located_in nucleus	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: ubiquitin carboxyl-terminal hydrolase 16

XP_015155018.1

EC 3.1.2.15

XP_015155027.1

EC 3.1.2.15

XP_040513450.1

EC 3.1.2.15

XP_040513451.1

EC 3.1.2.15

XP_040513452.1

EC 3.1.2.15

XP_040513453.1

EC 3.1.2.15

XP_040513454.1

EC 3.1.2.15

XP_040559191.1

EC 3.1.2.15

XP_040559201.1

EC 3.1.2.15

XP_416693.3

EC 3.1.2.15

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

NC_052532.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Range

104080411..104101300

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_015299532.4 → XP_015155018.1 ubiquitin carboxyl-terminal hydrolase 16 isoform X1

UniProtKB/TrEMBL

A0A8V0Y5F1, A0A8V0YCD4

Related

ENSGALP00010013597.1, ENSGALT00010023764.1

Conserved Domains (4) summary

cd02667
Location:621 → 816

Peptidase_C19K; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...

cl02553
Location:194 → 335

Peptidase_C19; Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly ...

pfam00443
Location:625 → 815

UCH; Ubiquitin carboxyl-terminal hydrolase

pfam02148
Location:63 → 123

zf-UBP; Zn-finger in ubiquitin-hydrolases and other protein
XM_040703257.2 → XP_040559191.1 ubiquitin carboxyl-terminal hydrolase 16 isoform X2

UniProtKB/TrEMBL

A0A8V0YCD4

Conserved Domains (4) summary

COG5560
Location:83 → 816

UBP12; Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

cd02667
Location:620 → 815

Peptidase_C19K; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...

cl02553
Location:193 → 424

Peptidase_C19; Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly ...

cl09957
Location:48 → 114

zf-UBP; Zn-finger in ubiquitin-hydrolases and other protein
XM_416693.8 → XP_416693.3 ubiquitin carboxyl-terminal hydrolase 16 isoform X1

UniProtKB/TrEMBL

A0A8V0Y5F1, A0A8V0YCD4

Related

ENSGALP00010013601.1, ENSGALT00010023773.1

Conserved Domains (4) summary

cd02667
Location:621 → 816

Peptidase_C19K; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...

cl02553
Location:194 → 335

Peptidase_C19; Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly ...

pfam00443
Location:625 → 815

UCH; Ubiquitin carboxyl-terminal hydrolase

pfam02148
Location:63 → 123

zf-UBP; Zn-finger in ubiquitin-hydrolases and other protein
XM_015299541.4 → XP_015155027.1 ubiquitin carboxyl-terminal hydrolase 16 isoform X3

UniProtKB/TrEMBL

A0A8V0YCD4

Conserved Domains (4) summary

cd02667
Location:613 → 808

Peptidase_C19K; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...

cl02553
Location:186 → 327

Peptidase_C19; Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly ...

pfam00443
Location:617 → 807

UCH; Ubiquitin carboxyl-terminal hydrolase

pfam02148
Location:55 → 115

zf-UBP; Zn-finger in ubiquitin-hydrolases and other protein
XM_040703267.2 → XP_040559201.1 ubiquitin carboxyl-terminal hydrolase 16 isoform X4

UniProtKB/TrEMBL

A0A8V0YCC9, A0A8V0YCD4

Related

ENSGALP00010013596.1, ENSGALT00010023760.1

Conserved Domains (4) summary

COG5560
Location:75 → 808

UBP12; Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

cd02667
Location:612 → 807

Peptidase_C19K; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...

cl02553
Location:185 → 416

Peptidase_C19; Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly ...

cl09957
Location:40 → 106

zf-UBP; Zn-finger in ubiquitin-hydrolases and other protein

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

NC_052573.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Range

104169935..104190832

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_040657516.2 → XP_040513450.1 ubiquitin carboxyl-terminal hydrolase 16 isoform X1

UniProtKB/TrEMBL

A0A8V0YCD4

Conserved Domains (4) summary

COG5560
Location:83 → 817

UBP12; Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

cd02667
Location:621 → 816

Peptidase_C19K; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...

cl02553
Location:194 → 425

Peptidase_C19; Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly ...

cl09957
Location:48 → 114

zf-UBP; Zn-finger in ubiquitin-hydrolases and other protein
XM_040657518.2 → XP_040513452.1 ubiquitin carboxyl-terminal hydrolase 16 isoform X2

UniProtKB/TrEMBL

A0A8V0YCD4

Conserved Domains (4) summary

COG5560
Location:83 → 816

UBP12; Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

cd02667
Location:620 → 815

Peptidase_C19K; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...

cl02553
Location:193 → 424

Peptidase_C19; Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly ...

cl09957
Location:48 → 114

zf-UBP; Zn-finger in ubiquitin-hydrolases and other protein
XM_040657517.2 → XP_040513451.1 ubiquitin carboxyl-terminal hydrolase 16 isoform X1

UniProtKB/TrEMBL

A0A8V0YCD4

Conserved Domains (4) summary

COG5560
Location:83 → 817

UBP12; Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

cd02667
Location:621 → 816

Peptidase_C19K; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...

cl02553
Location:194 → 425

Peptidase_C19; Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly ...

cl09957
Location:48 → 114

zf-UBP; Zn-finger in ubiquitin-hydrolases and other protein
XM_040657519.2 → XP_040513453.1 ubiquitin carboxyl-terminal hydrolase 16 isoform X3

UniProtKB/TrEMBL

A0A8V0YCD4

Conserved Domains (4) summary

COG5560
Location:75 → 809

UBP12; Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

cd02667
Location:613 → 808

Peptidase_C19K; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...

cl02553
Location:186 → 417

Peptidase_C19; Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly ...

cl09957
Location:40 → 106

zf-UBP; Zn-finger in ubiquitin-hydrolases and other protein
XM_040657520.2 → XP_040513454.1 ubiquitin carboxyl-terminal hydrolase 16 isoform X4

UniProtKB/TrEMBL

A0A8V0YCD4

Conserved Domains (4) summary

COG5560
Location:75 → 808

UBP12; Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

cd02667
Location:612 → 807

Peptidase_C19K; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...

cl02553
Location:185 → 416

Peptidase_C19; Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly ...

cl09957
Location:40 → 106

zf-UBP; Zn-finger in ubiquitin-hydrolases and other protein