U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    SNX2 sorting nexin 2 [ Gallus gallus (chicken) ]

    Gene ID: 426797, updated on 3-Dec-2024

    Summary

    Go to the top of the page Help
    Symbol
    SNX2provided by CGNC
    Full Name
    sorting nexin 2provided by CGNC
    Primary source
    CGNC:52887
    See related
    Ensembl:ENSGALG00010001204
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See SNX2 in Genome Data Viewer
    Location:
    chromosome: Z
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) Z NC_052572.1 (85263333..85296307)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) Z NC_059536.1 (85263333..85296307)

    Chromosome Z - NC_052572.1Genomic Context describing neighboring genes Neighboring gene synuclein alpha interacting protein Neighboring gene uncharacterized LOC121108293 Neighboring gene uncharacterized LOC121108294 Neighboring gene sorting nexin 24 Neighboring gene peptidylprolyl isomerase C

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables phosphatidylinositol binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in early endosome to Golgi transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in intracellular protein transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in endosome membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of retromer complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    sorting nexin-2

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001012607.3 → NP_001012625.1  sorting nexin-2

      See identical proteins and their annotated locations for NP_001012625.1

      Status: PROVISIONAL

      Source sequence(s)
      JAENSK010000211
      UniProtKB/TrEMBL
      A0A8V0X7B4, Q5F406
      Related
      ENSGALP00010001335.1, ENSGALT00010002785.1
      Conserved Domains (3) summary
      cd07282
      Location:141 → 264
      PX_SNX2; The phosphoinositide binding Phox Homology domain of Sorting Nexin 2
      cd07664
      Location:282 → 515
      BAR_SNX2; The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2
      pfam03700
      Location:49 → 111
      Sorting_nexin; Sorting nexin, N-terminal domain

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052572.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      85263333..85296307
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015280786.4 → XP_015136272.2  sorting nexin-2 isoform X1

      UniProtKB/TrEMBL
      A0A8V0X1K2, A0A8V0X7B4
      Related
      ENSGALP00010001332.1, ENSGALT00010002782.1
      Conserved Domains (2) summary
      cd07282
      Location:141 → 264
      PX_SNX2; The phosphoinositide binding Phox Homology domain of Sorting Nexin 2
      cd07664
      Location:282 → 519
      BAR_SNX2; The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2

    2. XM_025144702.3 → XP_025000470.2  sorting nexin-2 isoform X2

      UniProtKB/TrEMBL
      A0A8V0X7B8
      Conserved Domains (2) summary
      cd07282
      Location:141 → 264
      PX_SNX2; The phosphoinositide binding Phox Homology domain of Sorting Nexin 2
      cl12013
      Location:282 → 495
      BAR; The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature

    3. XM_025144703.3 → XP_025000471.2  sorting nexin-2 isoform X3

      UniProtKB/TrEMBL
      A0A8V0X4K4, A0A8V0X7B8
      Related
      ENSGALP00010001331.1, ENSGALT00010002781.1
      Conserved Domains (2) summary
      cd07282
      Location:141 → 264
      PX_SNX2; The phosphoinositide binding Phox Homology domain of Sorting Nexin 2
      cl12013
      Location:282 → 491
      BAR; The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_059536.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      85263333..85296307
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046934954.1 → XP_046790910.1  sorting nexin-2 isoform X1

      UniProtKB/TrEMBL
      A0A8V0X1K2, A0A8V0X7B4

    2. XM_046934955.1 → XP_046790911.1  sorting nexin-2 isoform X2

      UniProtKB/TrEMBL
      A0A8V0X7B8

    3. XM_046934957.1 → XP_046790913.1  sorting nexin-2 isoform X3

      UniProtKB/TrEMBL
      A0A8V0X4K4, A0A8V0X7B8
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials