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    VPS33B VPS33B late endosome and lysosome associated [ Gallus gallus (chicken) ]

    Gene ID: 425858, updated on 3-Dec-2024

    Summary

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    Official Symbol
    VPS33Bprovided by CGNC
    Official Full Name
    VPS33B late endosome and lysosome associatedprovided by CGNC
    Primary source
    CGNC:52600
    See related
    Ensembl:ENSGALG00010000054
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See VPS33B in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    23
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 10 NC_052541.1 (20089072..20095871)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 10 NC_052582.1 (19953080..19959879)

    Chromosome 10 - NC_052541.1Genomic Context describing neighboring genes Neighboring gene tubulin tyrosine ligase like 6 Neighboring gene uncharacterized LOC107054224 Neighboring gene HD domain containing 3 Neighboring gene protein regulator of cytokinesis 1 Neighboring gene RCC1 domain containing 1 Neighboring gene unc-45 myosin chaperone A

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in intracellular protein transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of CORVET complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in lysosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    vacuolar protein sorting-associated protein 33B
    Names
    vacuolar protein sorting 33 homolog B

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001031348.2 → NP_001026519.1  vacuolar protein sorting-associated protein 33B

      See identical proteins and their annotated locations for NP_001026519.1

      Status: PROVISIONAL

      Source sequence(s)
      JAENSK010000246
      UniProtKB/TrEMBL
      A0A1D6UPS5, A0A8V0X255, F1NDH5, Q5ZL71
      Related
      ENSGALP00010000059.1, ENSGALT00010000083.1
      Conserved Domains (1) summary
      pfam00995
      Location:37 → 404
      Sec1; Sec1 family

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052541.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      20089072..20095871
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015292119.4 → XP_015147605.1  vacuolar protein sorting-associated protein 33B isoform X1

      UniProtKB/TrEMBL
      A0A3S5ZPB6, A0A8V0X255
      Related
      ENSGALP00010000058.1, ENSGALT00010000082.1
      Conserved Domains (1) summary
      pfam00995
      Location:37 → 405
      Sec1; Sec1 family

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052582.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      19953080..19959879
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046924960.1 → XP_046780916.1  vacuolar protein sorting-associated protein 33B isoform X1

      UniProtKB/TrEMBL
      A0A3S5ZPB6, A0A8V0X255
    Nucleotide Protein Strain
    Heading Accession and Version

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