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    SLF2 SMC5-SMC6 complex localization factor 2 [ Gallus gallus (chicken) ]

    Gene ID: 423858, updated on 17-Aug-2024

    Summary

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    Official Symbol
    SLF2provided by CGNC
    Official Full Name
    SMC5-SMC6 complex localization factor 2provided by CGNC
    Primary source
    CGNC:6073
    See related
    Ensembl:ENSGALG00010018526
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Also known as
    C10ORF6; FAM178A
    Orthologs
    human mouse all
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    Genomic context

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    See SLF2 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 6 NC_052537.1 (23894390..23921422, complement)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 6 NC_052578.1 (23785599..23813079, complement)

    Chromosome 6 - NC_052537.1Genomic Context describing neighboring genes Neighboring gene twinkle mtDNA helicase Neighboring gene mitochondrial ribosomal protein L43 Neighboring gene semaphorin 4G Neighboring gene uncharacterized LOC121113369 Neighboring gene uncharacterized LOC107053690 Neighboring gene microRNA 146b

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Transcriptome analysis for the chicken based on 19,626 finished cDNA sequences and 485,337 expressed sequence tags. Hubbard SJ, et al. Genome Res, 2005 Jan. PMID 15590942, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in DNA damage response IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of double-strand break repair IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein localization to site of double-strand break IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in site of double-strand break IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    SMC5-SMC6 complex localization factor protein 2
    Names
    family with sequence similarity 178, member A
    protein FAM178A

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052537.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      23894390..23921422 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_025151657.3 → XP_025007425.2  SMC5-SMC6 complex localization factor protein 2 isoform X2

      UniProtKB/TrEMBL
      A0A8V0ZDW6

    2. XM_015288749.4 → XP_015144235.2  SMC5-SMC6 complex localization factor protein 2 isoform X3

      UniProtKB/TrEMBL
      A0A8V0ZDW6

    3. XM_421726.8 → XP_421726.6  SMC5-SMC6 complex localization factor protein 2 isoform X1

      UniProtKB/TrEMBL
      A0A8V0Z0I7, A0A8V0ZDW6
      Related
      ENSGALP00010026749.1, ENSGALT00010044827.1

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052578.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      23785599..23813079 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040675179.2 → XP_040531113.1  SMC5-SMC6 complex localization factor protein 2 isoform X2

      UniProtKB/TrEMBL
      A0A8V0ZDW6

    2. XM_040675180.2 → XP_040531114.1  SMC5-SMC6 complex localization factor protein 2 isoform X3

      UniProtKB/TrEMBL
      A0A8V0ZDW6

    3. XM_040675178.2 → XP_040531112.1  SMC5-SMC6 complex localization factor protein 2 isoform X1

      UniProtKB/TrEMBL
      A0A8V0ZDW6
    Nucleotide Protein
    Heading Accession and Version

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