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    AP1B1 adaptor related protein complex 1 beta 1 subunit [ Gallus gallus (chicken) ]

    Gene ID: 417021, updated on 17-Aug-2024

    Summary

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    Symbol
    AP1B1provided by CGNC
    Full Name
    adaptor related protein complex 1 beta 1 subunitprovided by CGNC
    Primary source
    CGNC:6168
    See related
    Ensembl:ENSGALG00010000323
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See AP1B1 in Genome Data Viewer
    Location:
    chromosome: 15
    Exon count:
    24
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 15 NC_052546.1 (11132683..11145810)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 15 NC_052587.1 (11144849..11157988)

    Chromosome 15 - NC_052546.1Genomic Context describing neighboring genes Neighboring gene THO complex 5 Neighboring gene neurofilament heavy polypeptide Neighboring gene small nucleolar RNA SNORD125 Neighboring gene growth arrest specific 2 like 1 Neighboring gene EWS RNA binding protein 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables clathrin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in intracellular protein transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of clathrin adaptor complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of membrane coat IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    AP-1 complex subunit beta-1
    Names
    adaptor related protein complex 1 subunit beta 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052546.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      11132683..11145810
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_004934468.5 → XP_004934525.3  AP-1 complex subunit beta-1 isoform X1

      UniProtKB/TrEMBL
      A0A8V0X519
      Related
      ENSGALP00010000356.1, ENSGALT00010000622.1
      Conserved Domains (4) summary
      smart00809
      Location:735 → 835
      Alpha_adaptinC2; Adaptin C-terminal domain
      smart01020
      Location:844 → 957
      B2-adapt-app_C; Beta2-adaptin appendage, C-terminal sub-domain
      sd00044
      Location:51 → 75
      HEAT; HEAT repeat [structural motif]
      pfam01602
      Location:11 → 534
      Adaptin_N; Adaptin N terminal region

    2. XM_004934469.5 → XP_004934526.3  AP-1 complex subunit beta-1 isoform X2

      UniProtKB/TrEMBL
      A0A1D5PXH0
      Related
      ENSGALP00010000354.1, ENSGALT00010000618.1
      Conserved Domains (4) summary
      smart00809
      Location:735 → 835
      Alpha_adaptinC2; Adaptin C-terminal domain
      smart01020
      Location:844 → 954
      B2-adapt-app_C; Beta2-adaptin appendage, C-terminal sub-domain
      sd00044
      Location:51 → 75
      HEAT; HEAT repeat [structural motif]
      pfam01602
      Location:11 → 534
      Adaptin_N; Adaptin N terminal region

    3. XM_004934470.5 → XP_004934527.3  AP-1 complex subunit beta-1 isoform X3

      Conserved Domains (4) summary
      smart00809
      Location:728 → 828
      Alpha_adaptinC2; Adaptin C-terminal domain
      smart01020
      Location:837 → 950
      B2-adapt-app_C; Beta2-adaptin appendage, C-terminal sub-domain
      sd00044
      Location:51 → 75
      HEAT; HEAT repeat [structural motif]
      pfam01602
      Location:11 → 534
      Adaptin_N; Adaptin N terminal region

    4. XM_040648226.2 → XP_040504160.1  AP-1 complex subunit beta-1 isoform X4

      Conserved Domains (4) summary
      smart00809
      Location:728 → 828
      Alpha_adaptinC2; Adaptin C-terminal domain
      smart01020
      Location:837 → 947
      B2-adapt-app_C; Beta2-adaptin appendage, C-terminal sub-domain
      PTZ00429
      Location:2 → 617
      PTZ00429; beta-adaptin; Provisional
      sd00044
      Location:51 → 75
      HEAT; HEAT repeat [structural motif]

    5. XM_004934471.5 → XP_004934528.3  AP-1 complex subunit beta-1 isoform X5

      UniProtKB/TrEMBL
      A0A8V0WZY4
      Related
      ENSGALP00010000359.1, ENSGALT00010000624.1
      Conserved Domains (4) summary
      smart00809
      Location:718 → 818
      Alpha_adaptinC2; Adaptin C-terminal domain
      smart01020
      Location:827 → 940
      B2-adapt-app_C; Beta2-adaptin appendage, C-terminal sub-domain
      sd00044
      Location:51 → 75
      HEAT; HEAT repeat [structural motif]
      pfam01602
      Location:11 → 534
      Adaptin_N; Adaptin N terminal region

    6. XM_004934472.5 → XP_004934529.3  AP-1 complex subunit beta-1 isoform X6

      Conserved Domains (4) summary
      smart00809
      Location:718 → 818
      Alpha_adaptinC2; Adaptin C-terminal domain
      smart01020
      Location:827 → 937
      B2-adapt-app_C; Beta2-adaptin appendage, C-terminal sub-domain
      sd00044
      Location:51 → 75
      HEAT; HEAT repeat [structural motif]
      pfam01602
      Location:11 → 534
      Adaptin_N; Adaptin N terminal region

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052587.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      11144849..11157988
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040685176.2 → XP_040541110.1  AP-1 complex subunit beta-1 isoform X1

      Conserved Domains (4) summary
      smart00809
      Location:735 → 835
      Alpha_adaptinC2; Adaptin C-terminal domain
      smart01020
      Location:844 → 957
      B2-adapt-app_C; Beta2-adaptin appendage, C-terminal sub-domain
      PTZ00429
      Location:2 → 683
      PTZ00429; beta-adaptin; Provisional
      sd00044
      Location:51 → 75
      HEAT; HEAT repeat [structural motif]

    2. XM_040685177.2 → XP_040541111.1  AP-1 complex subunit beta-1 isoform X2

      Conserved Domains (4) summary
      smart00809
      Location:735 → 835
      Alpha_adaptinC2; Adaptin C-terminal domain
      smart01020
      Location:844 → 954
      B2-adapt-app_C; Beta2-adaptin appendage, C-terminal sub-domain
      PTZ00429
      Location:2 → 683
      PTZ00429; beta-adaptin; Provisional
      sd00044
      Location:51 → 75
      HEAT; HEAT repeat [structural motif]

    3. XM_040685178.2 → XP_040541112.1  AP-1 complex subunit beta-1 isoform X3

      Conserved Domains (4) summary
      smart00809
      Location:728 → 828
      Alpha_adaptinC2; Adaptin C-terminal domain
      smart01020
      Location:837 → 950
      B2-adapt-app_C; Beta2-adaptin appendage, C-terminal sub-domain
      PTZ00429
      Location:2 → 617
      PTZ00429; beta-adaptin; Provisional
      sd00044
      Location:51 → 75
      HEAT; HEAT repeat [structural motif]

    4. XM_040685180.2 → XP_040541114.1  AP-1 complex subunit beta-1 isoform X4

      Conserved Domains (4) summary
      smart00809
      Location:728 → 828
      Alpha_adaptinC2; Adaptin C-terminal domain
      smart01020
      Location:837 → 947
      B2-adapt-app_C; Beta2-adaptin appendage, C-terminal sub-domain
      PTZ00429
      Location:2 → 617
      PTZ00429; beta-adaptin; Provisional
      sd00044
      Location:51 → 75
      HEAT; HEAT repeat [structural motif]

    5. XM_040685181.2 → XP_040541115.1  AP-1 complex subunit beta-1 isoform X5

      Conserved Domains (4) summary
      smart00809
      Location:718 → 818
      Alpha_adaptinC2; Adaptin C-terminal domain
      smart01020
      Location:827 → 940
      B2-adapt-app_C; Beta2-adaptin appendage, C-terminal sub-domain
      PTZ00429
      Location:2 → 661
      PTZ00429; beta-adaptin; Provisional
      sd00044
      Location:51 → 75
      HEAT; HEAT repeat [structural motif]

    6. XM_040685182.2 → XP_040541116.1  AP-1 complex subunit beta-1 isoform X6

      Conserved Domains (4) summary
      smart00809
      Location:718 → 818
      Alpha_adaptinC2; Adaptin C-terminal domain
      smart01020
      Location:827 → 937
      B2-adapt-app_C; Beta2-adaptin appendage, C-terminal sub-domain
      PTZ00429
      Location:2 → 661
      PTZ00429; beta-adaptin; Provisional
      sd00044
      Location:51 → 75
      HEAT; HEAT repeat [structural motif]
    Nucleotide Protein
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