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    CWC22 CWC22 spliceosome associated protein homolog [ Gallus gallus (chicken) ]

    Gene ID: 424123, updated on 17-Aug-2024

    Summary

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    Symbol
    CWC22provided by CGNC
    Full Name
    CWC22 spliceosome associated protein homologprovided by CGNC
    Primary source
    CGNC:52133
    See related
    Ensembl:ENSGALG00010026114
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Also known as
    NCM
    Orthologs
    human mouse all
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    Genomic context

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    See CWC22 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 7 NC_052538.1 (14394066..14420788)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 7 NC_052579.1 (14320132..14348172)

    Chromosome 7 - NC_052538.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107053809 Neighboring gene integrin subunit alpha 4 Neighboring gene uncharacterized LOC121113386 Neighboring gene ubiquitin conjugating enzyme E2 E3 Neighboring gene zinc finger protein 385B Neighboring gene SEC14 and spectrin domain containing 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of catalytic step 2 spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pre-mRNA-splicing factor CWC22 homolog
    Names
    CWC22 homolog, spliceosome-associated protein
    nucampholin homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001031250.3 → NP_001026421.3  pre-mRNA-splicing factor CWC22 homolog

      Status: VALIDATED

      Source sequence(s)
      JAENSK010000236
      UniProtKB/TrEMBL
      A0A8V1A088, A0A8V1ACT5
      Related
      ENSGALP00010039287.1, ENSGALT00010063643.1
      Conserved Domains (3) summary
      smart00543
      Location:170 → 351
      MIF4G; Middle domain of eukaryotic initiation factor 4G (eIF4G)
      smart00544
      Location:458 → 564
      MA3; Domain in DAP-5, eIF4G, MA-3 and other proteins
      PRK12678
      Location:710 → 886
      PRK12678; transcription termination factor Rho; Provisional

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052538.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      14394066..14420788
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040703435.2 → XP_040559369.1  pre-mRNA-splicing factor CWC22 homolog isoform X1

      UniProtKB/TrEMBL
      A0A8V1A088, A0A8V1ACT5
      Conserved Domains (3) summary
      smart00543
      Location:170 → 351
      MIF4G; Middle domain of eukaryotic initiation factor 4G (eIF4G)
      smart00544
      Location:458 → 564
      MA3; Domain in DAP-5, eIF4G, MA-3 and other proteins
      PRK12678
      Location:710 → 886
      PRK12678; transcription termination factor Rho; Provisional

    2. XM_040703436.2 → XP_040559370.1  pre-mRNA-splicing factor CWC22 homolog isoform X1

      UniProtKB/TrEMBL
      A0A8V1A088, A0A8V1ACT5
      Conserved Domains (3) summary
      smart00543
      Location:170 → 351
      MIF4G; Middle domain of eukaryotic initiation factor 4G (eIF4G)
      smart00544
      Location:458 → 564
      MA3; Domain in DAP-5, eIF4G, MA-3 and other proteins
      PRK12678
      Location:710 → 886
      PRK12678; transcription termination factor Rho; Provisional

    3. XM_015289439.4 → XP_015144925.2  pre-mRNA-splicing factor CWC22 homolog isoform X1

      UniProtKB/TrEMBL
      A0A8V1A088, A0A8V1ACT5
      Related
      ENSGALP00010039289.1, ENSGALT00010063647.1
      Conserved Domains (3) summary
      smart00543
      Location:170 → 351
      MIF4G; Middle domain of eukaryotic initiation factor 4G (eIF4G)
      smart00544
      Location:458 → 564
      MA3; Domain in DAP-5, eIF4G, MA-3 and other proteins
      PRK12678
      Location:710 → 886
      PRK12678; transcription termination factor Rho; Provisional

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052579.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      14320132..14348172
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5ZKA3.2 GenPept UniProtKB/Swiss-Prot:Q5ZKA3

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.