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    SCAF11 SR-related CTD-associated factor 11 [ Gallus gallus (chicken) ]

    Gene ID: 417805, updated on 3-Dec-2024

    Summary

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    Official Symbol
    SCAF11provided by CGNC
    Official Full Name
    SR-related CTD-associated factor 11provided by CGNC
    Primary source
    CGNC:7356
    See related
    Ensembl:ENSGALG00010013945
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Also known as
    SFRS2IP; SRSF2IP
    Orthologs
    human mouse all
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    Genomic context

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    See SCAF11 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 1 NC_052532.1 (31005652..31047192, complement)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 1 NC_052573.1 (31342440..31383924, complement)

    Chromosome 1 - NC_052532.1Genomic Context describing neighboring genes Neighboring gene AT-rich interaction domain 2 Neighboring gene uncharacterized LOC121109002 Neighboring gene uncharacterized LOC121113294 Neighboring gene solute carrier family 38 member 1 Neighboring gene uncharacterized LOC101749506 Neighboring gene solute carrier family 38 member 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in spliceosomal complex assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein SCAF11
    Names
    SFRS2-interacting protein
    arginine/serine-rich 2
    interacting protein
    serine/arginine-rich splicing factor 2, interacting protein
    splicing factor, arginine/serine-rich 2, interacting protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001397916.1 → NP_001384845.1  protein SCAF11

      Status: VALIDATED

      Source sequence(s)
      JAENSK010000012
      UniProtKB/TrEMBL
      A0A1D5PYN0
      Related
      ENSGALP00010019726.1, ENSGALT00010033440.1
      Conserved Domains (3) summary
      COG5271
      Location:408 → 736
      MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
      pfam09606
      Location:1112 → 1254
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
      cd16636
      Location:39 → 81
      mRING-HC-C3HC3D_SCAF11; Modified RING finger, HC subclass (C3HC3D-type), found in SR-related and CTD-associated factor 11 (SCAF11) and similar proteins

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052532.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      31005652..31047192 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015281282.4 → XP_015136768.1  protein SCAF11 isoform X3

      UniProtKB/TrEMBL
      A0A1D5PYN0
      Related
      ENSGALP00010019742.1, ENSGALT00010033469.1
      Conserved Domains (3) summary
      COG5271
      Location:411 → 739
      MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
      pfam09606
      Location:1115 → 1257
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
      cd16636
      Location:39 → 81
      mRING-HC-C3HC3D_SCAF11; Modified RING finger, HC subclass (C3HC3D-type), found in SR-related and CTD-associated factor 11 (SCAF11) and similar proteins

    2. XM_046937936.1 → XP_046793892.1  protein SCAF11 isoform X2

      UniProtKB/TrEMBL
      A0A1D5PYN0, A0A8V0YU33
      Related
      ENSGALP00010019731.1, ENSGALT00010033452.1

    3. XM_046937933.1 → XP_046793889.1  protein SCAF11 isoform X1

      UniProtKB/TrEMBL
      A0A1D5PYN0

    4. XM_040695417.2 → XP_040551351.1  protein SCAF11 isoform X3

      UniProtKB/TrEMBL
      A0A1D5PYN0
      Conserved Domains (3) summary
      COG5271
      Location:411 → 739
      MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
      pfam09606
      Location:1115 → 1257
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
      cd16636
      Location:39 → 81
      mRING-HC-C3HC3D_SCAF11; Modified RING finger, HC subclass (C3HC3D-type), found in SR-related and CTD-associated factor 11 (SCAF11) and similar proteins

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052573.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      31342440..31383924 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001195570.4: Suppressed sequence

      Description
      NM_001195570.4: This RefSeq was removed because currently there is insufficient support for the transcript and the protein.
    Nucleotide Protein Strain
    Heading Accession and Version

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