U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    TTC8 tetratricopeptide repeat domain 8 [ Gallus gallus (chicken) ]

    Gene ID: 423401, updated on 3-Dec-2024

    Summary

    Go to the top of the page Help
    Symbol
    TTC8provided by CGNC
    Full Name
    tetratricopeptide repeat domain 8provided by CGNC
    Primary source
    CGNC:8101
    See related
    Ensembl:ENSGALG00010018064
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See TTC8 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 5 NC_052536.1 (42785643..42822119)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 5 NC_052577.1 (42747605..42784096)

    Chromosome 5 - NC_052536.1Genomic Context describing neighboring genes Neighboring gene zinc finger CCCH-type containing 14 Neighboring gene EMAP like 5 Neighboring gene uncharacterized LOC121110924 Neighboring gene transfer RNA threonine (anticodon UGU) Neighboring gene forkhead box N3 Neighboring gene uncharacterized LOC112532560 Neighboring gene translation initiation factor IF-2-like

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in non-motile cilium assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of BBSome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in ciliary basal body IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in non-motile cilium IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    tetratricopeptide repeat protein 8

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052536.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      42785643..42822119
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_421311.8 → XP_421311.6  tetratricopeptide repeat protein 8 isoform X1

      UniProtKB/TrEMBL
      A0A8V0YY70
      Related
      ENSGALP00010026002.1, ENSGALT00010043698.1

    2. XM_046942406.1 → XP_046798362.1  tetratricopeptide repeat protein 8 isoform X2

      UniProtKB/TrEMBL
      A0A8V0YY70

    3. XM_040701567.2 → XP_040557501.1  tetratricopeptide repeat protein 8 isoform X3

      Conserved Domains (3) summary
      TIGR02521
      Location:176 → 290
      type_IV_pilW; type IV pilus biogenesis/stability protein PilW
      TIGR02917
      Location:65 → 343
      PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
      sd00006
      Location:195 → 226
      TPR; TPR repeat [structural motif]

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052577.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      42747605..42784096
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040672957.2 → XP_040528891.2  tetratricopeptide repeat protein 8 isoform X1

      UniProtKB/TrEMBL
      A0A8V0YY70

    2. XM_046919401.1 → XP_046775357.1  tetratricopeptide repeat protein 8 isoform X2

      UniProtKB/TrEMBL
      A0A8V0YY70

    3. XM_040672958.2 → XP_040528892.1  tetratricopeptide repeat protein 8 isoform X3

      Conserved Domains (3) summary
      TIGR02521
      Location:176 → 290
      type_IV_pilW; type IV pilus biogenesis/stability protein PilW
      TIGR02917
      Location:65 → 343
      PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
      sd00006
      Location:195 → 226
      TPR; TPR repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials