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    SEMA5B semaphorin 5B [ Gallus gallus (chicken) ]

    Gene ID: 424248, updated on 3-Dec-2024

    Summary

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    Symbol
    SEMA5Bprovided by CGNC
    Full Name
    semaphorin 5Bprovided by CGNC
    Primary source
    CGNC:8881
    See related
    Ensembl:ENSGALG00010018458
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See SEMA5B in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    29
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 7 NC_052538.1 (26164391..26416599, complement)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 7 NC_052579.1 (26080173..26330881, complement)

    Chromosome 7 - NC_052538.1Genomic Context describing neighboring genes Neighboring gene HSPB1 associated protein 1 Neighboring gene disrupted in renal carcinoma 2 Neighboring gene protein disulfide isomerase family A member 5 Neighboring gene SEC22 homolog A, vesicle trafficking protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Semaphorin 5B is a repellent cue for sensory afferents projecting into the developing spinal cord. Liu RQ, et al. Development, 2014 May. PMID 24718987
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables chemorepellent activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables semaphorin receptor binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in axon extension IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in axon guidance IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of axon extension involved in axon guidance IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in neural crest cell migration IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of cell migration IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in semaphorin-plexin signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    semaphorin-5B
    Names
    sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5B

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052538.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      26164391..26416599 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040704228.2 → XP_040560162.1  semaphorin-5B isoform X3

      UniProtKB/TrEMBL
      A0A8V0ZDH8
      Conserved Domains (3) summary
      cd11264
      Location:60 → 496
      Sema_5B; The Sema domain, a protein interacting module, of semaphorin 5B (Sema5B)
      smart00209
      Location:855 → 907
      TSP1; Thrombospondin type 1 repeats
      pfam01437
      Location:497 → 544
      PSI; Plexin repeat

    2. XM_040704230.1 → XP_040560164.1  semaphorin-5B isoform X4

      UniProtKB/TrEMBL
      A0A1D5PYV3, A0A8V0Z000
      Related
      ENSGALP00010026578.1, ENSGALT00010044638.1
      Conserved Domains (3) summary
      cd11264
      Location:60 → 496
      Sema_5B; The Sema domain, a protein interacting module, of semaphorin 5B (Sema5B)
      smart00209
      Location:855 → 907
      TSP1; Thrombospondin type 1 repeats
      pfam01437
      Location:497 → 544
      PSI; Plexin repeat

    3. XM_015289991.4 → XP_015145477.1  semaphorin-5B isoform X3

      UniProtKB/TrEMBL
      A0A8V0ZDH8
      Related
      ENSGALP00010026589.1, ENSGALT00010044649.1
      Conserved Domains (3) summary
      cd11264
      Location:60 → 496
      Sema_5B; The Sema domain, a protein interacting module, of semaphorin 5B (Sema5B)
      smart00209
      Location:855 → 907
      TSP1; Thrombospondin type 1 repeats
      pfam01437
      Location:497 → 544
      PSI; Plexin repeat

    4. XM_004942929.5 → XP_004942986.1  semaphorin-5B isoform X2

      UniProtKB/TrEMBL
      A0A1D5PWJ8, A0A8V0Z000
      Related
      ENSGALP00010026593.1, ENSGALT00010044656.1
      Conserved Domains (3) summary
      cd11264
      Location:60 → 496
      Sema_5B; The Sema domain, a protein interacting module, of semaphorin 5B (Sema5B)
      smart00209
      Location:855 → 907
      TSP1; Thrombospondin type 1 repeats
      pfam01437
      Location:497 → 544
      PSI; Plexin repeat

    5. XM_040704229.1 → XP_040560163.1  semaphorin-5B isoform X3

      UniProtKB/TrEMBL
      A0A8V0ZDH8
      Conserved Domains (3) summary
      cd11264
      Location:60 → 496
      Sema_5B; The Sema domain, a protein interacting module, of semaphorin 5B (Sema5B)
      smart00209
      Location:855 → 907
      TSP1; Thrombospondin type 1 repeats
      pfam01437
      Location:497 → 544
      PSI; Plexin repeat

    6. XM_040704227.2 → XP_040560161.1  semaphorin-5B isoform X3

      UniProtKB/TrEMBL
      A0A8V0ZDH8
      Conserved Domains (3) summary
      cd11264
      Location:60 → 496
      Sema_5B; The Sema domain, a protein interacting module, of semaphorin 5B (Sema5B)
      smart00209
      Location:855 → 907
      TSP1; Thrombospondin type 1 repeats
      pfam01437
      Location:497 → 544
      PSI; Plexin repeat

    7. XM_015289990.4 → XP_015145476.2  semaphorin-5B isoform X1

      UniProtKB/TrEMBL
      A0A8V0Z000
      Conserved Domains (3) summary
      cd11264
      Location:60 → 496
      Sema_5B; The Sema domain, a protein interacting module, of semaphorin 5B (Sema5B)
      smart00209
      Location:855 → 907
      TSP1; Thrombospondin type 1 repeats
      smart00423
      Location:497 → 534
      PSI; domain found in Plexins, Semaphorins and Integrins

    8. XM_046943776.1 → XP_046799732.1  semaphorin-5B isoform X1

      UniProtKB/TrEMBL
      A0A8V0Z000

    9. XM_004942927.5 → XP_004942984.2  semaphorin-5B isoform X1

      UniProtKB/TrEMBL
      A0A8V0Z000
      Conserved Domains (3) summary
      cd11264
      Location:60 → 496
      Sema_5B; The Sema domain, a protein interacting module, of semaphorin 5B (Sema5B)
      smart00209
      Location:855 → 907
      TSP1; Thrombospondin type 1 repeats
      smart00423
      Location:497 → 534
      PSI; domain found in Plexins, Semaphorins and Integrins

    10. XM_040704225.2 → XP_040560159.1  semaphorin-5B isoform X1

      UniProtKB/TrEMBL
      A0A8V0Z000
      Conserved Domains (3) summary
      cd11264
      Location:60 → 496
      Sema_5B; The Sema domain, a protein interacting module, of semaphorin 5B (Sema5B)
      smart00209
      Location:855 → 907
      TSP1; Thrombospondin type 1 repeats
      smart00423
      Location:497 → 534
      PSI; domain found in Plexins, Semaphorins and Integrins

    11. XM_015289989.4 → XP_015145475.2  semaphorin-5B isoform X1

      UniProtKB/TrEMBL
      A0A8V0Z000
      Conserved Domains (3) summary
      cd11264
      Location:60 → 496
      Sema_5B; The Sema domain, a protein interacting module, of semaphorin 5B (Sema5B)
      smart00209
      Location:855 → 907
      TSP1; Thrombospondin type 1 repeats
      smart00423
      Location:497 → 534
      PSI; domain found in Plexins, Semaphorins and Integrins

    12. XM_040704226.2 → XP_040560160.1  semaphorin-5B isoform X1

      UniProtKB/TrEMBL
      A0A8V0Z000
      Conserved Domains (3) summary
      cd11264
      Location:60 → 496
      Sema_5B; The Sema domain, a protein interacting module, of semaphorin 5B (Sema5B)
      smart00209
      Location:855 → 907
      TSP1; Thrombospondin type 1 repeats
      smart00423
      Location:497 → 534
      PSI; domain found in Plexins, Semaphorins and Integrins

    13. XM_015289993.4 → XP_015145479.1  semaphorin-5B isoform X5

      UniProtKB/TrEMBL
      A0A8V0Z000
      Conserved Domains (3) summary
      cd11264
      Location:60 → 496
      Sema_5B; The Sema domain, a protein interacting module, of semaphorin 5B (Sema5B)
      smart00209
      Location:798 → 850
      TSP1; Thrombospondin type 1 repeats
      pfam01437
      Location:497 → 544
      PSI; Plexin repeat

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052579.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      26080173..26330881 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040676023.2 → XP_040531957.1  semaphorin-5B isoform X3

      UniProtKB/TrEMBL
      A0A8V0ZDH8
      Conserved Domains (3) summary
      cd11264
      Location:60 → 496
      Sema_5B; The Sema domain, a protein interacting module, of semaphorin 5B (Sema5B)
      smart00209
      Location:855 → 907
      TSP1; Thrombospondin type 1 repeats
      pfam01437
      Location:497 → 544
      PSI; Plexin repeat

    2. XM_040676026.2 → XP_040531960.1  semaphorin-5B isoform X4

      UniProtKB/TrEMBL
      A0A1D5PYV3, A0A8V0Z000
      Conserved Domains (3) summary
      cd11264
      Location:60 → 496
      Sema_5B; The Sema domain, a protein interacting module, of semaphorin 5B (Sema5B)
      smart00209
      Location:855 → 907
      TSP1; Thrombospondin type 1 repeats
      pfam01437
      Location:497 → 544
      PSI; Plexin repeat

    3. XM_040676021.2 → XP_040531955.1  semaphorin-5B isoform X3

      UniProtKB/TrEMBL
      A0A8V0ZDH8
      Conserved Domains (3) summary
      cd11264
      Location:60 → 496
      Sema_5B; The Sema domain, a protein interacting module, of semaphorin 5B (Sema5B)
      smart00209
      Location:855 → 907
      TSP1; Thrombospondin type 1 repeats
      pfam01437
      Location:497 → 544
      PSI; Plexin repeat

    4. XM_040676020.2 → XP_040531954.1  semaphorin-5B isoform X2

      UniProtKB/TrEMBL
      A0A1D5PWJ8, A0A8V0Z000
      Conserved Domains (3) summary
      cd11264
      Location:60 → 496
      Sema_5B; The Sema domain, a protein interacting module, of semaphorin 5B (Sema5B)
      smart00209
      Location:855 → 907
      TSP1; Thrombospondin type 1 repeats
      pfam01437
      Location:497 → 544
      PSI; Plexin repeat

    5. XM_040676024.1 → XP_040531958.1  semaphorin-5B isoform X3

      UniProtKB/TrEMBL
      A0A8V0ZDH8
      Conserved Domains (3) summary
      cd11264
      Location:60 → 496
      Sema_5B; The Sema domain, a protein interacting module, of semaphorin 5B (Sema5B)
      smart00209
      Location:855 → 907
      TSP1; Thrombospondin type 1 repeats
      pfam01437
      Location:497 → 544
      PSI; Plexin repeat

    6. XM_040676022.2 → XP_040531956.1  semaphorin-5B isoform X3

      UniProtKB/TrEMBL
      A0A8V0ZDH8
      Conserved Domains (3) summary
      cd11264
      Location:60 → 496
      Sema_5B; The Sema domain, a protein interacting module, of semaphorin 5B (Sema5B)
      smart00209
      Location:855 → 907
      TSP1; Thrombospondin type 1 repeats
      pfam01437
      Location:497 → 544
      PSI; Plexin repeat

    7. XM_040676015.2 → XP_040531949.1  semaphorin-5B isoform X1

      UniProtKB/TrEMBL
      A0A8V0Z000
      Conserved Domains (3) summary
      cd11264
      Location:60 → 496
      Sema_5B; The Sema domain, a protein interacting module, of semaphorin 5B (Sema5B)
      smart00209
      Location:855 → 907
      TSP1; Thrombospondin type 1 repeats
      smart00423
      Location:497 → 534
      PSI; domain found in Plexins, Semaphorins and Integrins

    8. XM_046922164.1 → XP_046778120.1  semaphorin-5B isoform X1

      UniProtKB/TrEMBL
      A0A8V0Z000

    9. XM_040676018.2 → XP_040531952.1  semaphorin-5B isoform X1

      UniProtKB/TrEMBL
      A0A8V0Z000
      Conserved Domains (3) summary
      cd11264
      Location:60 → 496
      Sema_5B; The Sema domain, a protein interacting module, of semaphorin 5B (Sema5B)
      smart00209
      Location:855 → 907
      TSP1; Thrombospondin type 1 repeats
      smart00423
      Location:497 → 534
      PSI; domain found in Plexins, Semaphorins and Integrins

    10. XM_040676016.2 → XP_040531950.1  semaphorin-5B isoform X1

      UniProtKB/TrEMBL
      A0A8V0Z000
      Conserved Domains (3) summary
      cd11264
      Location:60 → 496
      Sema_5B; The Sema domain, a protein interacting module, of semaphorin 5B (Sema5B)
      smart00209
      Location:855 → 907
      TSP1; Thrombospondin type 1 repeats
      smart00423
      Location:497 → 534
      PSI; domain found in Plexins, Semaphorins and Integrins

    11. XM_040676017.2 → XP_040531951.1  semaphorin-5B isoform X1

      UniProtKB/TrEMBL
      A0A8V0Z000
      Conserved Domains (3) summary
      cd11264
      Location:60 → 496
      Sema_5B; The Sema domain, a protein interacting module, of semaphorin 5B (Sema5B)
      smart00209
      Location:855 → 907
      TSP1; Thrombospondin type 1 repeats
      smart00423
      Location:497 → 534
      PSI; domain found in Plexins, Semaphorins and Integrins

    12. XM_040676019.2 → XP_040531953.1  semaphorin-5B isoform X1

      UniProtKB/TrEMBL
      A0A8V0Z000
      Conserved Domains (3) summary
      cd11264
      Location:60 → 496
      Sema_5B; The Sema domain, a protein interacting module, of semaphorin 5B (Sema5B)
      smart00209
      Location:855 → 907
      TSP1; Thrombospondin type 1 repeats
      smart00423
      Location:497 → 534
      PSI; domain found in Plexins, Semaphorins and Integrins

    13. XM_040676027.2 → XP_040531961.1  semaphorin-5B isoform X5

      UniProtKB/TrEMBL
      A0A8V0Z000
      Conserved Domains (3) summary
      cd11264
      Location:60 → 496
      Sema_5B; The Sema domain, a protein interacting module, of semaphorin 5B (Sema5B)
      smart00209
      Location:798 → 850
      TSP1; Thrombospondin type 1 repeats
      pfam01437
      Location:497 → 544
      PSI; Plexin repeat
    Nucleotide Protein Strain
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