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    TAF4B TATA-box binding protein associated factor 4b [ Gallus gallus (chicken) ]

    Gene ID: 421086, updated on 17-Aug-2024

    Summary

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    Symbol
    TAF4Bprovided by CGNC
    Full Name
    TATA-box binding protein associated factor 4bprovided by CGNC
    Primary source
    CGNC:11252
    See related
    Ensembl:ENSGALG00010005536
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See TAF4B in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 2 NC_052533.1 (103770829..103844126)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 2 NC_052574.1 (103835835..103909577)

    Chromosome 2 - NC_052533.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107052003 Neighboring gene SS18, nBAF chromatin remodeling complex subunit Neighboring gene potassium channel tetramerization domain containing 1 Neighboring gene uncharacterized LOC107056037 Neighboring gene uncharacterized LOC121109969

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II general transcription initiation factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein heterodimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in transcription initiation at RNA polymerase II promoter IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of transcription factor TFIID complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription initiation factor TFIID subunit 4B
    Names
    TAF4b RNA polymerase II, TATA box binding protein (TBP)-associated factor, 105kDa

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052533.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      103770829..103844126
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_025147907.3 → XP_025003675.1  transcription initiation factor TFIID subunit 4B isoform X4

      Conserved Domains (4) summary
      PHA03378
      Location:2 → 124
      PHA03378; EBNA-3B; Provisional
      pfam05236
      Location:390 → 638
      TAF4; Transcription initiation factor TFIID component TAF4 family
      pfam07531
      Location:236 → 303
      TAFH; NHR1 homology to TAF
      cl41773
      Location:37 → 380
      SP1-4_N; N-terminal domain of transcription factor Specificity Proteins (SP) 1-4

    2. XM_419170.8 → XP_419170.7  transcription initiation factor TFIID subunit 4B isoform X1

      UniProtKB/TrEMBL
      A0A8V0XM95, A0A8V0XUV7
      Related
      ENSGALP00010007815.1, ENSGALT00010013253.1
      Conserved Domains (4) summary
      cd08045
      Location:577 → 829
      TAF4; TATA Binding Protein (TBP) Associated Factor 4 (TAF4) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex
      PHA03378
      Location:2 → 124
      PHA03378; EBNA-3B; Provisional
      TIGR02813
      Location:342 → 519
      omega_3_PfaA; polyketide-type polyunsaturated fatty acid synthase PfaA
      cl02658
      Location:236 → 329
      TAFH; NHR1 homology to TAF

    3. XM_025147906.3 → XP_025003674.2  transcription initiation factor TFIID subunit 4B isoform X2

      UniProtKB/TrEMBL
      A0A8V0XUV7
      Conserved Domains (4) summary
      cd08045
      Location:576 → 828
      TAF4; TATA Binding Protein (TBP) Associated Factor 4 (TAF4) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex
      PHA03378
      Location:2 → 124
      PHA03378; EBNA-3B; Provisional
      TIGR02813
      Location:342 → 519
      omega_3_PfaA; polyketide-type polyunsaturated fatty acid synthase PfaA
      cl02658
      Location:236 → 329
      TAFH; NHR1 homology to TAF

    4. XM_015277993.4 → XP_015133479.2  transcription initiation factor TFIID subunit 4B isoform X3

      UniProtKB/TrEMBL
      A0A8V0XS93, A0A8V0XUV7
      Related
      ENSGALP00010007814.1, ENSGALT00010013252.1
      Conserved Domains (3) summary
      cd08045
      Location:506 → 758
      TAF4; TATA Binding Protein (TBP) Associated Factor 4 (TAF4) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex
      TIGR02813
      Location:271 → 448
      omega_3_PfaA; polyketide-type polyunsaturated fatty acid synthase PfaA
      cl02658
      Location:165 → 258
      TAFH; NHR1 homology to TAF

    RNA

    1. XR_003073896.3 RNA Sequence

    2. XR_003073897.3 RNA Sequence

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052574.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      103835835..103909577
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040664404.2 → XP_040520338.1  transcription initiation factor TFIID subunit 4B isoform X4

      Conserved Domains (4) summary
      PHA03378
      Location:2 → 124
      PHA03378; EBNA-3B; Provisional
      pfam05236
      Location:390 → 638
      TAF4; Transcription initiation factor TFIID component TAF4 family
      pfam07531
      Location:236 → 303
      TAFH; NHR1 homology to TAF
      cl41773
      Location:37 → 380
      SP1-4_N; N-terminal domain of transcription factor Specificity Proteins (SP) 1-4

    2. XM_040664401.2 → XP_040520335.1  transcription initiation factor TFIID subunit 4B isoform X1

      UniProtKB/TrEMBL
      A0A8V0XM95, A0A8V0XUV7
      Conserved Domains (4) summary
      cd08045
      Location:577 → 829
      TAF4; TATA Binding Protein (TBP) Associated Factor 4 (TAF4) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex
      PHA03378
      Location:2 → 124
      PHA03378; EBNA-3B; Provisional
      TIGR02813
      Location:342 → 519
      omega_3_PfaA; polyketide-type polyunsaturated fatty acid synthase PfaA
      cl02658
      Location:236 → 329
      TAFH; NHR1 homology to TAF

    3. XM_040664402.2 → XP_040520336.1  transcription initiation factor TFIID subunit 4B isoform X2

      UniProtKB/TrEMBL
      A0A8V0XUV7
      Conserved Domains (4) summary
      cd08045
      Location:576 → 828
      TAF4; TATA Binding Protein (TBP) Associated Factor 4 (TAF4) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex
      PHA03378
      Location:2 → 124
      PHA03378; EBNA-3B; Provisional
      TIGR02813
      Location:342 → 519
      omega_3_PfaA; polyketide-type polyunsaturated fatty acid synthase PfaA
      cl02658
      Location:236 → 329
      TAFH; NHR1 homology to TAF

    4. XM_040664403.2 → XP_040520337.1  transcription initiation factor TFIID subunit 4B isoform X3

      UniProtKB/TrEMBL
      A0A8V0XS93, A0A8V0XUV7
      Conserved Domains (3) summary
      cd08045
      Location:506 → 758
      TAF4; TATA Binding Protein (TBP) Associated Factor 4 (TAF4) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex
      TIGR02813
      Location:271 → 448
      omega_3_PfaA; polyketide-type polyunsaturated fatty acid synthase PfaA
      cl02658
      Location:165 → 258
      TAFH; NHR1 homology to TAF

    RNA

    1. XR_005846682.2 RNA Sequence

    2. XR_005846683.2 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

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