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    ASCC3 activating signal cointegrator 1 complex subunit 3 [ Gallus gallus (chicken) ]

    Gene ID: 421790, updated on 17-Aug-2024

    Summary

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    Symbol
    ASCC3provided by CGNC
    Full Name
    activating signal cointegrator 1 complex subunit 3provided by CGNC
    Primary source
    CGNC:11527
    See related
    Ensembl:ENSGALG00010015140
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See ASCC3 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    42
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 3 NC_052534.1 (70366854..70627351)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 3 NC_052575.1 (70140887..70402023)

    Chromosome 3 - NC_052534.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112532199 Neighboring gene glutamate ionotropic receptor kainate type subunit 2 Neighboring gene uncharacterized LOC101751234 Neighboring gene SIM bHLH transcription factor 1 Neighboring gene PR/SET domain 13

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A set of testis-specific novel genes collected from a collection of Korean Native Chicken ESTs. Shin JH, et al. Anim Genet, 2005 Aug. PMID 16026346
    2. Non-coding RNAs revealed during identification of genes involved in chicken immune responses. Ahanda ML, et al. Immunogenetics, 2009 Jan. PMID 19009289
    3. A comprehensive collection of chicken cDNAs. Boardman PE, et al. Curr Biol, 2002 Nov 19. PMID 12445392
    4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    5. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    activating signal cointegrator 1 complex subunit 3
    NP_001292140.1
    XP_046770009.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001305211.2 → NP_001292140.1  activating signal cointegrator 1 complex subunit 3

      See identical proteins and their annotated locations for NP_001292140.1

      Status: VALIDATED

      Source sequence(s)
      JAENSK010000065
      UniProtKB/Swiss-Prot
      F1NTD6
      Related
      ENSGALP00010021237.1, ENSGALT00010036482.1
      Conserved Domains (6) summary
      smart00490
      Location:1623 → 1702
      HELICc; helicase superfamily c-terminal domain
      smart00487
      Location:1331 → 1530
      DEXDc; DEAD-like helicases superfamily
      smart00973
      Location:1821 → 2186
      Sec63; Sec63 Brl domain
      COG1204
      Location:449 → 1253
      BRR2; Replicative superfamily II helicase [Replication, recombination and repair]
      pfam00270
      Location:1337 → 1508
      DEAD; DEAD/DEAH box helicase
      pfam02889
      Location:987 → 1295
      Sec63; Sec63 Brl domain

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052534.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      70366854..70627351
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052575.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      70140887..70402023
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046914053.1 → XP_046770009.1  activating signal cointegrator 1 complex subunit 3 isoform X1

      UniProtKB/Swiss-Prot
      F1NTD6
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    F1NTD6.2 GenPept UniProtKB/Swiss-Prot:F1NTD6

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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