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    ccep-97 uncharacterized protein [ Caenorhabditis elegans ]

    Gene ID: 178871, updated on 9-Dec-2024

    Summary

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    Official Symbol
    ccep-97
    Official Full Name
    uncharacterized protein
    Primary source
    WormBase:WBGene00019842
    Locus tag
    CELE_R02F11.4
    See related
    AllianceGenome:WB:WBGene00019842
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable alpha-tubulin binding activity and dynein heavy chain binding activity. Predicted to be involved in outer dynein arm assembly. Predicted to be active in cytoplasm. Orthologous to human CEP97 (centrosomal protein 97). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See ccep-97 in Genome Data Viewer
    Location:
    chromosome: V
    Exon count:
    8
    Sequence:
    Chromosome: V; NC_003283.11 (4810865..4818663, complement)

    Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene CC domain-containing protein Neighboring gene Cation efflux protein cytoplasmic domain-containing protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Adenylosuccinate synthetase Neighboring gene Heat shock protein hsp-6

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003283.11

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A combined binary interaction and phenotypic map of C. elegans cell polarity proteins. Koorman T, et al. Nat Cell Biol, 2016 Mar. PMID 26780296, Free PMC Article
    2. A protein domain-based interactome network for C. elegans early embryogenesis. Boxem M, et al. Cell, 2008 Aug 8. PMID 18692475, Free PMC Article
    3. A modified TurboID approach identifies tissue-specific centriolar components in C. elegans. Holzer E, et al. PLoS Genet, 2022 Apr. PMID 35442950, Free PMC Article
    4. Depletion of endogenously biotinylated carboxylases enhances the sensitivity of TurboID-mediated proximity labeling in Caenorhabditis elegans. Artan M, et al. J Biol Chem, 2022 Sep. PMID 35933017, Free PMC Article
    5. Interactome analysis of Caenorhabditis elegans synapses by TurboID-based proximity labeling. Artan M, et al. J Biol Chem, 2021 Sep. PMID 34416233, Free PMC Article

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables alpha-tubulin binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables dynein heavy chain binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in outer dynein arm assembly IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein
    NP_504289.1
    • Confirmed by transcript evidence;
      Product from WormBase gene class ccep; C. elegans CEntrosomal Protein

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003283.11 Reference assembly

      Range
      4810865..4818663 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_071888.5 → NP_504289.1  uncharacterized protein CELE_R02F11.4 [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_504289.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      O16366
      Conserved Domains (5) summary
      cd00116
      Location:118 → 245
      LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
      sd00033
      Location:57 → 78
      LRR_RI; leucine-rich repeat [structural motif]
      pfam10805
      Location:480 → 557
      DUF2730; Protein of unknown function (DUF2730)
      pfam12799
      Location:163 → 205
      LRR_4; Leucine Rich repeats (2 copies)
      pfam13855
      Location:143 → 197
      LRR_8; Leucine rich repeat
    Nucleotide Protein
    Heading Accession and Version

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