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    F13B12.4 Putative pyridoxal-phosphate dependent protein F13B12.4 [ Caenorhabditis elegans ]

    Gene ID: 177937, updated on 9-Dec-2024

    Summary

    Official Symbol
    F13B12.4
    Official Full Name
    Putative pyridoxal-phosphate dependent protein F13B12.4
    Primary source
    WormBase:WBGene00008732
    Locus tag
    CELE_F13B12.4
    See related
    AllianceGenome:WB:WBGene00008732
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be involved in cysteine biosynthetic process. Predicted to be active in cytoplasm. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

    See F13B12.4 in Genome Data Viewer
    Location:
    chromosome: IV
    Exon count:
    6
    Sequence:
    Chromosome: IV; NC_003282.8 (10444583..10449899, complement)

    Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene Insulin-like domain-containing protein Neighboring gene Ion transport domain-containing protein Neighboring gene ncRNA Neighboring gene Neprosin domain-containing protein Neighboring gene ncRNA Neighboring gene Tryptophan synthase beta chain-like PALP domain-containing protein Neighboring gene ncRNA

    Interactions

    General gene information

    Gene Ontology Provided by WormBase

    Process Evidence Code Pubs
    involved_in cysteine biosynthetic process  
    involved_in cysteine biosynthetic process  
    Component Evidence Code Pubs
    is_active_in cytoplasm  

    General protein information

    Preferred Names
    Putative pyridoxal-phosphate dependent protein F13B12.4
    NP_501928.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003282.8 Reference assembly

      Range
      10444583..10449899 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_069527.9 → NP_501928.1  Putative pyridoxal-phosphate dependent protein F13B12.4 [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_501928.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q19374
      Conserved Domains (2) summary
      pfam00291
      Location:72 → 376
      PALP; Pyridoxal-phosphate dependent enzyme
      cl00342
      Location:58 → 384
      Trp-synth-beta_II; Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan ...

    RNA

    1. NR_131597.1 RNA Sequence

      Status: REVIEWED

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